Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHQ43_RS24815 Genome accession   NZ_CP062253
Coordinates   5578964..5580181 (+) Length   405 a.a.
NCBI ID   WP_192562436.1    Uniprot ID   -
Organism   Pseudomonas gozinkensis strain IzPS32d     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5573964..5585181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHQ43_RS24795 - 5575499..5575795 (+) 297 WP_192562432.1 DUF2845 domain-containing protein -
  IHQ43_RS24800 - 5575964..5576320 (-) 357 WP_192562433.1 BON domain-containing protein -
  IHQ43_RS24805 - 5576618..5577034 (-) 417 WP_192562434.1 pilin -
  IHQ43_RS24810 pilB 5577261..5578961 (+) 1701 WP_192562435.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHQ43_RS24815 pilC 5578964..5580181 (+) 1218 WP_192562436.1 type II secretion system F family protein Machinery gene
  IHQ43_RS24820 pilD 5580183..5581055 (+) 873 WP_192562437.1 A24 family peptidase Machinery gene
  IHQ43_RS24825 coaE 5581052..5581675 (+) 624 WP_192562438.1 dephospho-CoA kinase -
  IHQ43_RS24830 yacG 5581672..5581872 (+) 201 WP_011335983.1 DNA gyrase inhibitor YacG -
  IHQ43_RS24835 - 5581879..5582094 (-) 216 WP_007959584.1 hypothetical protein -
  IHQ43_RS24840 - 5582160..5582849 (-) 690 WP_192562439.1 energy-coupling factor ABC transporter permease -
  IHQ43_RS24845 - 5582983..5583609 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  IHQ43_RS24850 - 5583606..5584133 (+) 528 WP_085655054.1 MOSC domain-containing protein -
  IHQ43_RS24855 - 5584185..5584358 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43961.57 Da        Isoelectric Point: 10.0365

>NTDB_id=487396 IHQ43_RS24815 WP_192562436.1 5578964..5580181(+) (pilC) [Pseudomonas gozinkensis strain IzPS32d]
MAVKAAKISVYAWEGTDRKGSKVTGELSGQNPALIKAQLRKQGINPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMSKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPAAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGALVAGFFGTR
HALKKSQALRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=487396 IHQ43_RS24815 WP_192562436.1 5578964..5580181(+) (pilC) [Pseudomonas gozinkensis strain IzPS32d]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTCTACGCCTGGGAAGGCACGGACCGCAAAGGCAGCAAGGTGACCGGCGAGTT
GAGCGGCCAGAACCCCGCGCTGATCAAGGCGCAATTACGCAAGCAGGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CCTCGCTGCTGAGCTTCGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATTGGCGAGGGCTTCGAAAACCCGGCAATGAGCAAGCTGGTGGACGA
GGTGAAACAGGAGGTCGCCGCCGGCAACAGCTTCGCCGCCGCGCTGCGCAAGAAGCCGCAATATTTCGATGAGCTGTACT
GCAACCTGGTGGATGCCGGCGAGCAATCCGGCGCCCTCGACACTCTGCTGGAACGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTATCCGGCCGCCGTAGTGCTGGTGGCGGCGGTGGTCACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCTCCGGCTTCGGTGCCGAACTGCCGGCCTTCACGCTGATGG
TCATCAGCCTGTCCGAGTTCATGCAGCAATGGTGGTGGGCAATTCTCGGAGCGCTGGTGGCCGGTTTTTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCCTTGCGCGACCGGCGTGATGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACATTGAT
GTACAAATCCGCCGTGGCACGTTTTGCCCGGACCCTGTCGACCACCTTCGCGGCCGGCGTGCCCTTGGTGGAGGCGCTGG
ACTCGGTAGCCGGAGCCACCGGCAACGTGGTGTTCAAGCGCGCCGTGCTGCGCATCCGCCAGGACGTTTCCACCGGCATG
CAGCTGAATTTCTCGATGCGCTCCACGGGTATCTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAATCCGG
CGCACTGGACGAGATGCTCGACAAGGTCGCGGGTTTCTATGAGGACGAGGTGGACAACATGGTCGACAACCTCACCAGTC
TGATGGAACCGTTCATCATGGTGGTGCTCGGGGTGATCGTCGGTGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.568

100

0.746
  pilC Acinetobacter baylyi ADP1

59.367

100

0.602
  pilC Acinetobacter baumannii D1279779

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

53.75

98.765

0.531
  pilG Neisseria meningitidis 44/76-A

43.21

100

0.432
  pilG Neisseria gonorrhoeae MS11

43.176

99.506

0.43
  pilC Vibrio cholerae strain A1552

43.939

97.778

0.43
  pilC Vibrio campbellii strain DS40M4

41.379

100

0.415
  pilC Thermus thermophilus HB27

38.653

99.012

0.383