Detailed information NTG0487397

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IHQ43_RS24820
• Genome accession: NZ_CP062253
• Coordinates: 5580183..5581055 (+)
• Length: 290 a.a.
• NCBI ID: WP_192562437.1
• Uniprot ID: -
• Organism: Pseudomonas gozinkensis strain IzPS32d
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5575183..5586055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHQ43_RS24795	-	5575499..5575795 (+)	297	WP_192562432.1	DUF2845 domain-containing protein	-
IHQ43_RS24800	-	5575964..5576320 (-)	357	WP_192562433.1	BON domain-containing protein	-
IHQ43_RS24805	-	5576618..5577034 (-)	417	WP_192562434.1	pilin	-
IHQ43_RS24810	pilB	5577261..5578961 (+)	1701	WP_192562435.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IHQ43_RS24815	pilC	5578964..5580181 (+)	1218	WP_192562436.1	type II secretion system F family protein	Machinery gene
IHQ43_RS24820	pilD	5580183..5581055 (+)	873	WP_192562437.1	A24 family peptidase	Machinery gene
IHQ43_RS24825	coaE	5581052..5581675 (+)	624	WP_192562438.1	dephospho-CoA kinase	-
IHQ43_RS24830	yacG	5581672..5581872 (+)	201	WP_011335983.1	DNA gyrase inhibitor YacG	-
IHQ43_RS24835	-	5581879..5582094 (-)	216	WP_007959584.1	hypothetical protein	-
IHQ43_RS24840	-	5582160..5582849 (-)	690	WP_192562439.1	energy-coupling factor ABC transporter permease	-
IHQ43_RS24845	-	5582983..5583609 (+)	627	WP_007959580.1	DUF1780 domain-containing protein	-
IHQ43_RS24850	-	5583606..5584133 (+)	528	WP_085655054.1	MOSC domain-containing protein	-
IHQ43_RS24855	-	5584185..5584358 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
IHQ43_RS24860	-	5584422..5585720 (+)	1299	WP_064599500.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32279.59 Da
• Isoelectric Point: 7.7029

>NTDB_id=487397 IHQ43_RS24820 WP_192562437.1 5580183..5581055(+) (pilD) [Pseudomonas gozinkensis strain IzPS32d]
MPIDELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGRCSGCSAAISKRYPLTELACGLLSAFIAWHLGFGWQACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=487397 IHQ43_RS24820 WP_192562437.1 5580183..5581055(+) (pilD) [Pseudomonas gozinkensis strain IzPS32d]
ATGCCTATCGACGAACTCTTCAGTCTCTATCCGCTGGCCTTTGTTTTCACCGCCCTGCTGCTCGGGCTGGTGGTCGGCAG
TTTTCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAATGGCGCCAGCAGGCTCACGATGTGCTGGGGC
TGCCCGGGGAGGCGCCGTTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAATATTCCCGTGTTGAGTTACGTATTCCTGCGCGGGCGTTGTTCAGGTTGCAGCGCAGCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCATCTGGGTTTCGGCTGGCAGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAGCATCAATTGCTGCCCGATGTACTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTTCCGCTGCACGATGCCCTGTGGGGCGCGGT
GCTGGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAACTGCTGGCATTGCTTGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTGTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCGACCAGAAAACCTCGACGCCAATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.773	97.241	0.503
pilD	Vibrio campbellii strain DS40M4	51.064	97.241	0.497
pilD	Acinetobacter baumannii D1279779	48.175	94.483	0.455
pilD	Acinetobacter nosocomialis M2	47.445	94.483	0.448
pilD	Neisseria gonorrhoeae MS11	46.667	93.103	0.434