Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IF199_RS25680 Genome accession   NZ_CP062252
Coordinates   5600958..5602175 (+) Length   405 a.a.
NCBI ID   WP_192559019.1    Uniprot ID   -
Organism   Pseudomonas allokribbensis strain IzPS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5595958..5607175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF199_RS25660 - 5597468..5597764 (+) 297 WP_102621087.1 DUF2845 domain-containing protein -
  IF199_RS25665 - 5597933..5598289 (-) 357 WP_096820895.1 BON domain-containing protein -
  IF199_RS25670 - 5598588..5599028 (-) 441 WP_096820894.1 pilin -
  IF199_RS25675 pilB 5599255..5600955 (+) 1701 WP_096820893.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IF199_RS25680 pilC 5600958..5602175 (+) 1218 WP_192559019.1 type II secretion system F family protein Machinery gene
  IF199_RS25685 pilD 5602177..5603049 (+) 873 WP_192559020.1 A24 family peptidase Machinery gene
  IF199_RS25690 coaE 5603046..5603669 (+) 624 WP_096820890.1 dephospho-CoA kinase -
  IF199_RS25695 yacG 5603666..5603866 (+) 201 WP_192559021.1 DNA gyrase inhibitor YacG -
  IF199_RS25700 - 5603875..5604090 (-) 216 WP_096820888.1 hypothetical protein -
  IF199_RS25705 - 5604156..5604845 (-) 690 WP_192559022.1 energy-coupling factor ABC transporter permease -
  IF199_RS25710 - 5604979..5605605 (+) 627 WP_003228301.1 DUF1780 domain-containing protein -
  IF199_RS25715 - 5605750..5605923 (+) 174 WP_096820886.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44078.87 Da        Isoelectric Point: 10.1093

>NTDB_id=487367 IF199_RS25680 WP_192559019.1 5600958..5602175(+) (pilC) [Pseudomonas allokribbensis strain IzPS23]
MAVKAAKISVYAWEGTDKKGSRITGELSGQNPALIKAQLRKQGINPGKVRKKSASLLNFGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPTAVILVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVIGLSEFMQQWWWAILGALVAAFFGTR
HALKKSQALRDRRDAWLLKLPLVGTMMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVATGM
QLNFSMRTTGIFPNMAVQMTAIGEESGALDDMLDKVAGFYEEEVDNMVDNLTSLMEPFVMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=487367 IF199_RS25680 WP_192559019.1 5600958..5602175(+) (pilC) [Pseudomonas allokribbensis strain IzPS23]
ATGGCCGTCAAGGCAGCGAAAATCAGCGTCTATGCCTGGGAAGGCACGGACAAGAAAGGCAGCAGGATCACCGGCGAGTT
GAGCGGACAAAACCCCGCGCTGATCAAGGCACAGTTGCGCAAGCAGGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CGTCGTTGCTGAATTTCGGCAAACGCATCAAGCCGCTGGACATCGCCCTCTTCACCCGGCAGATGGCAACCATGATGAAG
GCCGGCGTGCCGTTGCTGCAGTCGTTCGACATCATCGGCGAAGGTTTTGAAAACCCGGCGATGCGCAAACTGGTGGACGA
GGTGAAACAGGAAGTCGCCGCCGGTAACAGCTTCGCCGCAGCCCTGCGCAAGAAACCGCAATACTTCGACGAGTTGTACT
GCAACCTGGTCGATGCCGGCGAGCAATCCGGCGCCCTCGATACCCTTTTGGAACGCGTAGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCCACCGCCGTGATCCTGGTGGCGGCGGTCGTCACCGGGAT
TCTGCTGGTGAAAGTGGTGCCGCAGTTCCAGTCGGTGTTTTCCGGATTCGGCGCCGAACTGCCAGCGTTCACCCTGATGG
TGATCGGCCTCTCGGAGTTCATGCAGCAATGGTGGTGGGCGATTCTCGGCGCGCTGGTCGCAGCGTTTTTCGGCACCCGC
CATGCCCTGAAGAAATCCCAGGCCCTGCGTGACCGGCGTGATGCCTGGCTGCTGAAACTGCCGCTGGTGGGCACCATGAT
GTACAAGTCCGCCGTGGCCCGTTTCGCCCGAACCCTGTCGACCACGTTTGCCGCCGGCGTGCCGCTGGTCGAAGCGCTGG
ACTCGGTTGCCGGGGCCACCGGCAACGTGGTGTTCAAACGTGCGGTGCTGCGCATTCGCCAGGACGTGGCCACCGGCATG
CAGTTGAACTTTTCGATGCGCACCACCGGAATCTTTCCGAACATGGCCGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCCCTGGACGATATGCTCGACAAGGTTGCCGGGTTCTACGAGGAAGAAGTGGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCTTTCGTCATGGTGGTACTCGGGGTGATCGTCGGCGGACTGGTCGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.074

100

0.741
  pilC Acinetobacter baumannii D1279779

59.314

100

0.598
  pilC Acinetobacter baylyi ADP1

58.578

100

0.59
  pilC Legionella pneumophila strain ERS1305867

54

98.765

0.533
  pilG Neisseria gonorrhoeae MS11

43.176

99.506

0.43
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilG Neisseria meningitidis 44/76-A

42.68

99.506

0.425
  pilC Vibrio campbellii strain DS40M4

40.887

100

0.41
  pilC Thermus thermophilus HB27

38.71

99.506

0.385