Detailed information NTG0487368

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IF199_RS25685
• Genome accession: NZ_CP062252
• Coordinates: 5602177..5603049 (+)
• Length: 290 a.a.
• NCBI ID: WP_192559020.1
• Uniprot ID: -
• Organism: Pseudomonas allokribbensis strain IzPS23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5597177..5608049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF199_RS25660	-	5597468..5597764 (+)	297	WP_102621087.1	DUF2845 domain-containing protein	-
IF199_RS25665	-	5597933..5598289 (-)	357	WP_096820895.1	BON domain-containing protein	-
IF199_RS25670	-	5598588..5599028 (-)	441	WP_096820894.1	pilin	-
IF199_RS25675	pilB	5599255..5600955 (+)	1701	WP_096820893.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IF199_RS25680	pilC	5600958..5602175 (+)	1218	WP_192559019.1	type II secretion system F family protein	Machinery gene
IF199_RS25685	pilD	5602177..5603049 (+)	873	WP_192559020.1	A24 family peptidase	Machinery gene
IF199_RS25690	coaE	5603046..5603669 (+)	624	WP_096820890.1	dephospho-CoA kinase	-
IF199_RS25695	yacG	5603666..5603866 (+)	201	WP_192559021.1	DNA gyrase inhibitor YacG	-
IF199_RS25700	-	5603875..5604090 (-)	216	WP_096820888.1	hypothetical protein	-
IF199_RS25705	-	5604156..5604845 (-)	690	WP_192559022.1	energy-coupling factor ABC transporter permease	-
IF199_RS25710	-	5604979..5605605 (+)	627	WP_003228301.1	DUF1780 domain-containing protein	-
IF199_RS25715	-	5605750..5605923 (+)	174	WP_096820886.1	DUF3094 domain-containing protein	-
IF199_RS25720	-	5605987..5607285 (+)	1299	WP_096820885.1	NAD(P)/FAD-dependent oxidoreductase	-
IF199_RS25725	-	5607499..5607906 (+)	408	WP_096820884.1	hypothetical protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32330.73 Da
• Isoelectric Point: 7.7029

>NTDB_id=487368 IF199_RS25685 WP_192559020.1 5602177..5603049(+) (pilD) [Pseudomonas allokribbensis strain IzPS23]
MPIDELFALYPLAFVFTALVLGLVVGSFLNVVIWRLPKMLEREWRQQAHDVLGLPVETPLPVYNLMLPHSQCPHCAHRIR
AWENIPLLSYLFLRGRCSSCAAPISKRYPLTELACGVLSAFIAWHMGFGWPACLMIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVIMLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=487368 IF199_RS25685 WP_192559020.1 5602177..5603049(+) (pilD) [Pseudomonas allokribbensis strain IzPS23]
ATGCCCATCGACGAACTCTTCGCCCTCTATCCGCTGGCCTTTGTCTTCACCGCTCTGGTGCTCGGACTGGTGGTCGGAAG
CTTCCTCAATGTCGTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGAATGGCGCCAGCAGGCCCACGACGTGCTCGGGC
TGCCCGTCGAAACGCCGCTGCCGGTCTACAATCTGATGCTGCCGCACTCGCAGTGCCCGCATTGCGCCCACCGCATTCGT
GCGTGGGAAAACATTCCGCTGCTCAGCTACCTGTTTTTGCGCGGCCGCTGCTCGTCATGCGCGGCGCCGATCAGCAAGCG
TTATCCGTTGACCGAACTGGCCTGCGGCGTGCTGTCGGCGTTCATCGCCTGGCATATGGGTTTTGGCTGGCCGGCCTGTC
TGATGATCGTCCTGACCTGGGGCTTGCTGGCGATGAGTCTGATCGACACCGAGCATCAGCTGTTGCCCGATGTACTGGTG
CTGCCGCTGCTGTGGCTGGGATTGATCGTCAACAGCTTCGGCCTGTTCGTCTCGCTGCACGACGCGTTGTGGGGGGCAGT
GGCCGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGTCACGGTGATT
TCAAGTTGCTGGCATTGCTCGGGGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACCATCCTGCTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTATGCTCAAGCTGCGCGACCAGAAAACCTCGACGCCAATCCCCTTCGGGCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.901	97.241	0.524
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	48.239	97.931	0.472
pilD	Acinetobacter nosocomialis M2	48.239	97.931	0.472
pilD	Neisseria gonorrhoeae MS11	49.259	93.103	0.459