Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IHE41_RS00195 | Genome accession | NZ_CP062153 |
| Coordinates | 30732..31190 (-) | Length | 152 a.a. |
| NCBI ID | WP_025536236.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 17-VB00214 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 25732..36190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHE41_RS00175 (IHE41_00175) | coaE | 26251..26865 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| IHE41_RS00180 (IHE41_00180) | pilD | 26866..27735 (-) | 870 | WP_025533026.1 | A24 family peptidase | Machinery gene |
| IHE41_RS00185 (IHE41_00185) | pilC | 27800..29023 (-) | 1224 | WP_029804706.1 | type II secretion system F family protein | Machinery gene |
| IHE41_RS00190 (IHE41_00190) | pilB | 29047..30732 (-) | 1686 | WP_133280437.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IHE41_RS00195 (IHE41_00195) | pilA | 30732..31190 (-) | 459 | WP_025536236.1 | pilin | Machinery gene |
| IHE41_RS00200 (IHE41_00200) | nadC | 31453..32340 (-) | 888 | WP_005479699.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| IHE41_RS00205 (IHE41_00205) | ampD | 32433..32984 (+) | 552 | WP_005479703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| IHE41_RS00210 (IHE41_00210) | pdhR | 33390..34157 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15647.94 Da Isoelectric Point: 8.4867
>NTDB_id=486487 IHE41_RS00195 WP_025536236.1 30732..31190(-) (pilA) [Vibrio parahaemolyticus strain 17-VB00214]
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAMPQYQKYVAKSEVASVLATLTGAKTNVEAYTVENGLFPDGSASDATPTA
LGVPSMHLGTVAFTDQSADGGKISFTFATTASAGVSALVSGKKLTLTRTATSGGWDCSSSDLGSELLPKTCK
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAMPQYQKYVAKSEVASVLATLTGAKTNVEAYTVENGLFPDGSASDATPTA
LGVPSMHLGTVAFTDQSADGGKISFTFATTASAGVSALVSGKKLTLTRTATSGGWDCSSSDLGSELLPKTCK
Nucleotide
Download Length: 459 bp
>NTDB_id=486487 IHE41_RS00195 WP_025536236.1 30732..31190(-) (pilA) [Vibrio parahaemolyticus strain 17-VB00214]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACGCTAATTGAATTGATGATTGTGGTGGCGGTAATTGGTGTTTT
GGCGGCGATTGCAATGCCACAATACCAAAAGTATGTAGCTAAAAGTGAAGTTGCATCTGTTTTAGCAACATTGACAGGGG
CTAAAACTAATGTAGAAGCTTACACTGTAGAGAACGGTTTATTTCCAGATGGCTCAGCTTCTGATGCAACACCAACGGCC
CTAGGGGTTCCATCAATGCATTTAGGAACTGTAGCTTTTACAGACCAAAGTGCTGATGGTGGCAAAATTTCTTTTACATT
TGCAACAACAGCTAGTGCGGGTGTTAGTGCTTTAGTTTCAGGGAAAAAACTGACTCTTACGCGAACGGCAACATCTGGAG
GATGGGATTGCTCATCATCTGATTTGGGTAGCGAATTGCTTCCTAAAACTTGTAAATAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACGCTAATTGAATTGATGATTGTGGTGGCGGTAATTGGTGTTTT
GGCGGCGATTGCAATGCCACAATACCAAAAGTATGTAGCTAAAAGTGAAGTTGCATCTGTTTTAGCAACATTGACAGGGG
CTAAAACTAATGTAGAAGCTTACACTGTAGAGAACGGTTTATTTCCAGATGGCTCAGCTTCTGATGCAACACCAACGGCC
CTAGGGGTTCCATCAATGCATTTAGGAACTGTAGCTTTTACAGACCAAAGTGCTGATGGTGGCAAAATTTCTTTTACATT
TGCAACAACAGCTAGTGCGGGTGTTAGTGCTTTAGTTTCAGGGAAAAAACTGACTCTTACGCGAACGGCAACATCTGGAG
GATGGGATTGCTCATCATCTGATTTGGGTAGCGAATTGCTTCCTAAAACTTGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.968 |
100 |
0.52 |
| pilA | Vibrio cholerae strain A1552 |
50.968 |
100 |
0.52 |
| pilA | Vibrio cholerae C6706 |
50.968 |
100 |
0.52 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
49.64 |
91.447 |
0.454 |
| pilA | Pseudomonas aeruginosa PAK |
45.033 |
99.342 |
0.447 |
| pilA | Acinetobacter baumannii strain A118 |
43.243 |
97.368 |
0.421 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.259 |
94.079 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.776 |
96.711 |
0.375 |
| pilA/pilA1 | Eikenella corrodens VA1 |
34.591 |
100 |
0.362 |