Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHE41_RS00185 Genome accession   NZ_CP062153
Coordinates   27800..29023 (-) Length   407 a.a.
NCBI ID   WP_029804706.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 17-VB00214     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 22800..34023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE41_RS00145 (IHE41_00145) rpsP 22907..23155 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  IHE41_RS00150 (IHE41_00150) rimM 23184..23732 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  IHE41_RS00155 (IHE41_00155) trmD 23760..24503 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IHE41_RS00160 (IHE41_00160) rplS 24545..24898 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  IHE41_RS00165 (IHE41_00165) yacG 25220..25414 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  IHE41_RS00170 (IHE41_00170) zapD 25483..26223 (-) 741 WP_023624252.1 cell division protein ZapD -
  IHE41_RS00175 (IHE41_00175) coaE 26251..26865 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  IHE41_RS00180 (IHE41_00180) pilD 26866..27735 (-) 870 WP_025533026.1 A24 family peptidase Machinery gene
  IHE41_RS00185 (IHE41_00185) pilC 27800..29023 (-) 1224 WP_029804706.1 type II secretion system F family protein Machinery gene
  IHE41_RS00190 (IHE41_00190) pilB 29047..30732 (-) 1686 WP_133280437.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHE41_RS00195 (IHE41_00195) pilA 30732..31190 (-) 459 WP_025536236.1 pilin Machinery gene
  IHE41_RS00200 (IHE41_00200) nadC 31453..32340 (-) 888 WP_005479699.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IHE41_RS00205 (IHE41_00205) ampD 32433..32984 (+) 552 WP_005479703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45236.45 Da        Isoelectric Point: 10.3852

>NTDB_id=486485 IHE41_RS00185 WP_029804706.1 27800..29023(-) (pilC) [Vibrio parahaemolyticus strain 17-VB00214]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSICVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=486485 IHE41_RS00185 WP_029804706.1 27800..29023(-) (pilC) [Vibrio parahaemolyticus strain 17-VB00214]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTAAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCTGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACAAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCCGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398