Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IEJ03_RS06795 Genome accession   NZ_CP062005
Coordinates   1453201..1454430 (-) Length   409 a.a.
NCBI ID   WP_192036895.1    Uniprot ID   -
Organism   Halomonas sp. YLGW01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448201..1459430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEJ03_RS06770 - 1449586..1449963 (+) 378 WP_192036890.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  IEJ03_RS06775 - 1450388..1451293 (-) 906 WP_192036891.1 DNA replication terminus site-binding protein -
  IEJ03_RS06780 yacG 1451306..1451533 (-) 228 WP_192036892.1 DNA gyrase inhibitor YacG -
  IEJ03_RS06785 coaE 1451629..1452240 (-) 612 WP_192036893.1 dephospho-CoA kinase -
  IEJ03_RS06790 pilD 1452237..1453100 (-) 864 WP_192036894.1 A24 family peptidase Machinery gene
  IEJ03_RS06795 pilC 1453201..1454430 (-) 1230 WP_192036895.1 type II secretion system F family protein Machinery gene
  IEJ03_RS06800 pilB 1454504..1456273 (-) 1770 WP_192036896.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IEJ03_RS06805 - 1456694..1456807 (+) 114 Protein_1309 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  IEJ03_RS06810 - 1457223..1458701 (+) 1479 WP_192036897.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44849.67 Da        Isoelectric Point: 9.8946

>NTDB_id=485900 IEJ03_RS06795 WP_192036895.1 1453201..1454430(-) (pilC) [Halomonas sp. YLGW01]
MARKPKSAVKSKLYQWKWTGKGPGGRRVSGELIATEKAEVERVLNGQRIMVKNIRRKSGLGGGMGTIKPRDIMIFARQLA
TMIKAGVPMLQGFEVVAETLKKPVMRALVQELMDDVAAGSSFSEALRKHPKHFDQLFCNLIEAGEQSGALDHMLEKVAAY
KEKIETLKGRVKKALYYPVAVIGVGIGVTALLLIKVVPQFESLFNGFGAELPAPTRMTIAMSEFAQQYWWWGIILLVGTI
MLIRQGMRRSEPFAYRMHALALRIPVIGDILDKSSVSRYSSTLATTFGAGVPLVEALNTAAGASGNKVYERAIQQVRDDV
STGQQLHFAMRLTEQFPALAVQMVGIGEEAGSLDAMLNRVAAYYEEEVDNKVDALTSLLEPFIIVFLGVLVGGLVVSMYL
PIFELGSVL

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=485900 IEJ03_RS06795 WP_192036895.1 1453201..1454430(-) (pilC) [Halomonas sp. YLGW01]
ATGGCACGCAAGCCCAAGTCAGCTGTCAAGTCCAAGCTGTACCAGTGGAAATGGACCGGCAAGGGCCCGGGGGGACGCCG
CGTCAGTGGCGAGCTCATCGCCACCGAGAAGGCGGAAGTCGAGCGCGTCCTCAATGGCCAGCGCATCATGGTCAAGAATA
TCCGCCGCAAGAGCGGCCTCGGTGGCGGCATGGGCACAATCAAGCCCCGGGACATCATGATCTTCGCCCGCCAGCTGGCG
ACCATGATCAAGGCTGGCGTGCCCATGTTGCAGGGGTTCGAGGTAGTCGCCGAGACCCTCAAGAAGCCGGTCATGCGCGC
CCTGGTACAGGAGCTGATGGACGATGTCGCGGCCGGCTCGAGTTTCTCGGAAGCGCTGCGCAAGCACCCAAAGCACTTCG
ACCAGCTCTTCTGCAACCTGATCGAGGCCGGCGAACAGTCCGGGGCGCTGGATCATATGCTGGAGAAGGTGGCCGCCTAC
AAAGAAAAGATCGAGACCCTCAAGGGCCGGGTCAAGAAGGCGCTCTACTACCCGGTGGCCGTGATAGGGGTCGGCATCGG
CGTCACCGCCCTGCTGCTGATCAAGGTGGTGCCTCAGTTCGAAAGCCTCTTCAATGGCTTCGGTGCCGAGCTCCCTGCGC
CTACCCGCATGACCATCGCCATGTCCGAATTCGCCCAGCAGTACTGGTGGTGGGGTATCATCCTGCTGGTGGGCACCATC
ATGCTGATCCGCCAGGGCATGAGACGCTCAGAACCCTTCGCCTATCGCATGCATGCCCTCGCGCTGCGCATCCCGGTGAT
CGGCGACATCCTCGACAAGTCCTCGGTGTCGCGCTACTCGAGCACGCTTGCCACTACCTTCGGCGCCGGGGTGCCGCTGG
TCGAGGCACTCAATACCGCTGCCGGCGCCTCGGGCAACAAGGTCTATGAACGCGCCATCCAGCAGGTCCGTGATGACGTC
TCGACCGGCCAGCAGCTGCACTTCGCCATGCGCCTCACTGAACAGTTTCCGGCTCTGGCCGTGCAGATGGTGGGCATCGG
CGAGGAGGCGGGCTCCCTGGATGCCATGCTCAACCGGGTGGCCGCCTACTACGAAGAGGAAGTCGATAACAAGGTCGATG
CCCTGACGTCGCTACTGGAACCCTTTATCATCGTTTTTCTTGGGGTACTGGTGGGCGGCCTGGTGGTCTCCATGTACCTG
CCGATCTTCGAGCTCGGTAGCGTTCTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.825

100

0.521
  pilC Acinetobacter baumannii D1279779

52.645

97.066

0.511
  pilC Acinetobacter baylyi ADP1

51.637

97.066

0.501
  pilC Legionella pneumophila strain ERS1305867

48.615

97.066

0.472
  pilC Vibrio campbellii strain DS40M4

42.998

99.511

0.428
  pilC Vibrio cholerae strain A1552

43.86

97.555

0.428
  pilG Neisseria gonorrhoeae MS11

46.356

83.863

0.389
  pilG Neisseria meningitidis 44/76-A

46.064

83.863

0.386
  pilC Thermus thermophilus HB27

35.238

100

0.362