Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   IEJ03_RS06790 Genome accession   NZ_CP062005
Coordinates   1452237..1453100 (-) Length   287 a.a.
NCBI ID   WP_192036894.1    Uniprot ID   -
Organism   Halomonas sp. YLGW01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447237..1458100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEJ03_RS06765 bioA 1448046..1449329 (-) 1284 WP_192036889.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  IEJ03_RS06770 - 1449586..1449963 (+) 378 WP_192036890.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  IEJ03_RS06775 - 1450388..1451293 (-) 906 WP_192036891.1 DNA replication terminus site-binding protein -
  IEJ03_RS06780 yacG 1451306..1451533 (-) 228 WP_192036892.1 DNA gyrase inhibitor YacG -
  IEJ03_RS06785 coaE 1451629..1452240 (-) 612 WP_192036893.1 dephospho-CoA kinase -
  IEJ03_RS06790 pilD 1452237..1453100 (-) 864 WP_192036894.1 A24 family peptidase Machinery gene
  IEJ03_RS06795 pilC 1453201..1454430 (-) 1230 WP_192036895.1 type II secretion system F family protein Machinery gene
  IEJ03_RS06800 pilB 1454504..1456273 (-) 1770 WP_192036896.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IEJ03_RS06805 - 1456694..1456807 (+) 114 Protein_1309 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30782.84 Da        Isoelectric Point: 6.2181

>NTDB_id=485899 IEJ03_RS06790 WP_192036894.1 1452237..1453100(-) (pilD) [Halomonas sp. YLGW01]
MFADLPPSLFWPLVIVLGLCLGSFLNVVVTRLPVMLMQGWRAEAREALELEDEQDEESTATFNLITPASQCPACRASIAW
HDNVPLLGYLKRRGKCAGCGKHISLQYPLIELAGMALVVAVFAIHGASLESLFLTGACLTLLALAAIDFRTQLLPDIITL
PLLWVGLGYQLLFQPLMLTSGVIGAMAGYLSLWGFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQALPMVLILSAGVGA
VVGILIQLAIPRLRGAPMPFGPFLAMAGWIALLAGAPLQAAYLGLVS

Nucleotide


Download         Length: 864 bp        

>NTDB_id=485899 IEJ03_RS06790 WP_192036894.1 1452237..1453100(-) (pilD) [Halomonas sp. YLGW01]
TTGTTCGCCGATCTTCCGCCTTCCCTCTTCTGGCCACTGGTCATCGTGCTCGGCCTTTGCCTGGGCAGTTTCCTGAACGT
GGTGGTGACTCGCCTGCCGGTCATGCTGATGCAGGGCTGGCGAGCCGAGGCTCGCGAGGCCCTGGAGCTTGAAGATGAGC
AGGACGAGGAATCTACGGCGACCTTCAACCTGATCACGCCCGCGTCCCAGTGCCCGGCCTGTCGGGCCTCCATCGCCTGG
CACGATAACGTTCCACTGCTCGGCTATCTGAAGCGGCGCGGCAAGTGTGCGGGCTGCGGCAAGCACATCAGCCTGCAATA
CCCGCTGATCGAGCTCGCCGGCATGGCGCTGGTGGTGGCGGTCTTCGCCATTCATGGCGCAAGCCTCGAGAGCCTTTTCC
TGACAGGCGCCTGCCTGACGCTCTTGGCCCTGGCGGCCATCGACTTTCGTACTCAGTTGCTGCCGGACATCATCACCCTG
CCCCTGCTGTGGGTCGGGCTTGGCTATCAACTGCTCTTCCAGCCATTGATGCTGACCTCGGGGGTGATCGGCGCCATGGC
CGGCTATCTCTCGCTGTGGGGCTTCTACTGGCTGTTCAAGCTCGTCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGCTGGCCGCGCTTGGCGCATGGCTCGGCTGGCAAGCTCTGCCCATGGTACTGATCCTGTCGGCCGGTGTGGGCGCC
GTGGTGGGCATCCTTATTCAGCTCGCCATACCGCGCCTGCGCGGCGCCCCCATGCCCTTCGGCCCCTTCCTGGCCATGGC
GGGCTGGATCGCCCTGCTGGCCGGCGCGCCCTTGCAGGCTGCCTACCTTGGCCTGGTGTCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-122)

Type IV leader peptidase family (Peptidase_A24)

(138-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.555

95.47

0.502
  pilD Vibrio campbellii strain DS40M4

46.975

97.909

0.46
  pilD Neisseria gonorrhoeae MS11

48.12

92.683

0.446
  pilD Acinetobacter nosocomialis M2

45.756

94.425

0.432
  pilD Acinetobacter baumannii D1279779

45.387

94.425

0.429