Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KBP49_RS09795 | Genome accession | NZ_CP072933 |
| Coordinates | 2220927..2221373 (+) | Length | 148 a.a. |
| NCBI ID | WP_071869805.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain AlmaEM3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2215927..2226373
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KBP49_RS09775 (KBP49_09775) | - | 2216175..2217512 (+) | 1338 | WP_027700147.1 | HAMP domain-containing sensor histidine kinase | - |
| KBP49_RS09780 (KBP49_09780) | coaE | 2217779..2218402 (-) | 624 | WP_027700146.1 | dephospho-CoA kinase | - |
| KBP49_RS09785 (KBP49_09785) | pilD | 2218414..2219277 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| KBP49_RS09790 (KBP49_09790) | pilC | 2219284..2220486 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| KBP49_RS09795 (KBP49_09795) | pilA | 2220927..2221373 (+) | 447 | WP_071869805.1 | pilin | Machinery gene |
| KBP49_RS09800 (KBP49_09800) | - | 2221618..2221845 (-) | 228 | WP_012338102.1 | hypothetical protein | - |
| KBP49_RS09805 (KBP49_09805) | pilA/pilAI | 2222678..2223124 (+) | 447 | WP_071869804.1 | pilin | Machinery gene |
| KBP49_RS09810 (KBP49_09810) | pilB | 2223964..2225697 (+) | 1734 | WP_012338105.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15372.58 Da Isoelectric Point: 8.4988
>NTDB_id=485898 KBP49_RS09795 WP_071869805.1 2220927..2221373(+) (pilA) [Xylella fastidiosa subsp. multiplex strain AlmaEM3]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKATSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRTPDNSAGTNGVNNGGVWTCSTTVTSDALRPSGCIATK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKATSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRTPDNSAGTNGVNNGGVWTCSTTVTSDALRPSGCIATK
Nucleotide
Download Length: 447 bp
>NTDB_id=485898 KBP49_RS09795 WP_071869805.1 2220927..2221373(+) (pilA) [Xylella fastidiosa subsp. multiplex strain AlmaEM3]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGCTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTACCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCAACCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATTGCCACTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGCTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTACCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCAACCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATTGCCACTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae C6706 |
40 |
100 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.497 |
99.324 |
0.412 |
| pilA | Pseudomonas aeruginosa PAK |
37.736 |
100 |
0.405 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.816 |
99.324 |
0.405 |
| pilA | Acinetobacter baumannii strain A118 |
38 |
100 |
0.385 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.486 |
100 |
0.365 |