Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KBP48_RS10220 | Genome accession | NZ_CP072932 |
| Coordinates | 2278730..2279176 (+) | Length | 148 a.a. |
| NCBI ID | WP_071869805.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain BB08-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2273730..2284176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KBP48_RS10200 (KBP48_10200) | - | 2273978..2275315 (+) | 1338 | WP_027700147.1 | HAMP domain-containing sensor histidine kinase | - |
| KBP48_RS10205 (KBP48_10205) | coaE | 2275582..2276205 (-) | 624 | WP_027700146.1 | dephospho-CoA kinase | - |
| KBP48_RS10210 (KBP48_10210) | pilD | 2276217..2277080 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| KBP48_RS10215 (KBP48_10215) | pilC | 2277087..2278289 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| KBP48_RS10220 (KBP48_10220) | pilA | 2278730..2279176 (+) | 447 | WP_071869805.1 | pilin | Machinery gene |
| KBP48_RS10225 (KBP48_10225) | - | 2279421..2279648 (-) | 228 | WP_012338102.1 | hypothetical protein | - |
| KBP48_RS10230 (KBP48_10230) | pilA/pilAI | 2280481..2280924 (+) | 444 | WP_140189469.1 | pilin | Machinery gene |
| KBP48_RS10235 (KBP48_10235) | pilB | 2281759..2283492 (+) | 1734 | WP_140189468.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15372.58 Da Isoelectric Point: 8.4988
>NTDB_id=485839 KBP48_RS10220 WP_071869805.1 2278730..2279176(+) (pilA) [Xylella fastidiosa subsp. multiplex strain BB08-1]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKATSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRTPDNSAGTNGVNNGGVWTCSTTVTSDALRPSGCIATK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKATSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRTPDNSAGTNGVNNGGVWTCSTTVTSDALRPSGCIATK
Nucleotide
Download Length: 447 bp
>NTDB_id=485839 KBP48_RS10220 WP_071869805.1 2278730..2279176(+) (pilA) [Xylella fastidiosa subsp. multiplex strain BB08-1]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGCTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTACCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCAACCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATTGCCACTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGCTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTACCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTGTGTGGACCTGCTCAACCACCG
TCACCTCCGATGCACTGAGACCTTCCGGCTGCATTGCCACTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae C6706 |
40 |
100 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.497 |
99.324 |
0.412 |
| pilA | Pseudomonas aeruginosa PAK |
37.736 |
100 |
0.405 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.816 |
99.324 |
0.405 |
| pilA | Acinetobacter baumannii strain A118 |
38 |
100 |
0.385 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.486 |
100 |
0.365 |