Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IE339_RS22625 Genome accession   NZ_CP061868
Coordinates   4332024..4332383 (-) Length   119 a.a.
NCBI ID   WP_242172025.1    Uniprot ID   -
Organism   Priestia koreensis strain FS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4327024..4337383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE339_RS22610 (IE339_22585) - 4327509..4328942 (-) 1434 WP_242172017.1 N-acetylmuramoyl-L-alanine amidase -
  IE339_RS22615 (IE339_22590) galU 4329228..4330103 (-) 876 WP_277933930.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  IE339_RS22620 (IE339_22595) - 4330537..4331583 (+) 1047 WP_242172020.1 peptidoglycan endopeptidase -
  IE339_RS22625 (IE339_22600) ssbB 4332024..4332383 (-) 360 WP_242172025.1 single-stranded DNA-binding protein Machinery gene
  IE339_RS22630 (IE339_22605) - 4332501..4332935 (+) 435 WP_242172028.1 YwpF-like family protein -
  IE339_RS22635 (IE339_22610) - 4333465..4333890 (+) 426 WP_242172029.1 helix-turn-helix transcriptional regulator -
  IE339_RS22640 (IE339_22615) - 4334313..4334687 (-) 375 WP_242172030.1 hypothetical protein -
  IE339_RS22645 (IE339_22620) fabZ 4334990..4335421 (-) 432 WP_242172032.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IE339_RS22650 (IE339_22625) - 4335551..4336387 (-) 837 WP_242172035.1 flagellar hook-basal body protein -
  IE339_RS22655 (IE339_22630) - 4336430..4337269 (-) 840 WP_242172038.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13432.03 Da        Isoelectric Point: 9.8458

>NTDB_id=485394 IE339_RS22625 WP_242172025.1 4332024..4332383(-) (ssbB) [Priestia koreensis strain FS-1]
MINQTTLVGRLTKDPQLKNTSDGTAYSQITLAVNRNFRNQAGDFHTDFVTLTLWRKNAENTVIYCRKGSVIGVVGRVQTR
SYDNHQQQRVYTTEIIAESVKFLSGKAQETSSSQEQAFL

Nucleotide


Download         Length: 360 bp        

>NTDB_id=485394 IE339_RS22625 WP_242172025.1 4332024..4332383(-) (ssbB) [Priestia koreensis strain FS-1]
ATGATTAATCAAACGACCCTCGTTGGAAGACTTACAAAAGATCCTCAGCTAAAAAACACATCAGATGGTACAGCATATTC
CCAAATCACCTTGGCAGTCAATCGTAATTTTCGCAATCAAGCAGGAGATTTTCATACAGATTTTGTCACTCTTACCTTAT
GGAGAAAAAATGCAGAAAACACGGTGATTTATTGCCGAAAGGGCTCTGTAATCGGAGTAGTAGGGCGAGTACAAACAAGA
AGCTATGATAATCACCAGCAGCAGCGTGTATACACAACGGAAATTATTGCTGAGAGCGTCAAATTTCTGAGTGGGAAAGC
CCAGGAAACGTCGTCATCTCAGGAACAGGCTTTCTTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

94.118

0.513
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.774

89.076

0.479
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

98.319

0.454
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.667

90.756

0.378
  ssbB Lactococcus lactis subsp. cremoris KW2

42.453

89.076

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

35.772

100

0.37
  ssbB/cilA Streptococcus pneumoniae TIGR4

35.772

100

0.37
  ssbB/cilA Streptococcus pneumoniae Rx1

34.959

100

0.361
  ssbB/cilA Streptococcus pneumoniae D39

34.959

100

0.361
  ssbB/cilA Streptococcus pneumoniae R6

34.959

100

0.361
  ssbB/cilA Streptococcus mitis SK321

34.959

100

0.361