Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IC628_RS15285 Genome accession   NZ_CP061861
Coordinates   3163712..3164800 (-) Length   362 a.a.
NCBI ID   WP_086957404.1    Uniprot ID   A0A1V1V755
Organism   Photobacterium damselae subsp. piscicida strain AS-16-0555-7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3158712..3169800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC628_RS15255 (IC628_15255) hemF 3159235..3160146 (-) 912 WP_086957405.1 oxygen-dependent coproporphyrinogen oxidase -
  IC628_RS15260 (IC628_15260) - 3160150..3160707 (-) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  IC628_RS15265 (IC628_15265) purE 3160901..3161386 (+) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IC628_RS15270 (IC628_15270) - 3161389..3162510 (+) 1122 WP_044178823.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IC628_RS15275 (IC628_15275) - 3162578..3163135 (-) 558 WP_044178819.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  IC628_RS15280 (IC628_15280) - 3163236..3163709 (-) 474 WP_044178816.1 DUF494 family protein -
  IC628_RS15285 (IC628_15285) dprA 3163712..3164800 (-) 1089 WP_086957404.1 DNA-processing protein DprA Machinery gene
  IC628_RS15290 (IC628_15290) - 3164803..3165861 (-) 1059 WP_086957403.1 LysM peptidoglycan-binding domain-containing protein -
  IC628_RS15295 (IC628_15295) def 3166150..3166662 (+) 513 WP_086957402.1 peptide deformylase -
  IC628_RS15300 (IC628_15300) fmt 3166675..3167619 (+) 945 WP_086957401.1 methionyl-tRNA formyltransferase -
  IC628_RS15305 (IC628_15305) rsmB 3167758..3169035 (+) 1278 WP_044178802.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39023.08 Da        Isoelectric Point: 6.5708

>NTDB_id=485349 IC628_RS15285 WP_086957404.1 3163712..3164800(-) (dprA) [Photobacterium damselae subsp. piscicida strain AS-16-0555-7]
MDNIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVVAIKHPDNKKIDWALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDGQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAILGSIYNPASRGCNALIKSGAKLVESAQDIFEEIGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=485349 IC628_RS15285 WP_086957404.1 3163712..3164800(-) (dprA) [Photobacterium damselae subsp. piscicida strain AS-16-0555-7]
ATGGACAATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
TGCAATGCCAGAGCAAATAATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGTCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTGGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTCTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTAGGCATCGATGGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCTGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
TATTGTTGAGCAGGGTGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGGGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGTCGAGAGGTCTTTGCTATACTTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGATAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTGCTCGG
ATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V1V755

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.647

100

0.558
  dprA Vibrio cholerae strain A1552

51.058

100

0.533
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.396

100

0.445
  dprA Haemophilus influenzae Rd KW20

46.903

93.646

0.439
  dprA Neisseria meningitidis strain C311

43.302

88.674

0.384
  dprA Neisseria meningitidis MC58

43.302

88.674

0.384
  dprA Acinetobacter baumannii strain A118

42.284

89.503

0.378
  dprA Neisseria gonorrhoeae MS11

42.32

88.122

0.373
  dprA Neisseria gonorrhoeae strain FA1090

41.693

88.122

0.367
  dprA Acinetobacter baylyi ADP1

44.186

83.149

0.367