Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IE322_RS18080 | Genome accession | NZ_CP061848 |
| Coordinates | 3962882..3963292 (-) | Length | 136 a.a. |
| NCBI ID | WP_191471987.1 | Uniprot ID | - |
| Organism | Pseudomonas asiatica strain C3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3957882..3968292
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IE322_RS18065 (IE322_18065) | - | 3958457..3959320 (-) | 864 | WP_191471985.1 | FRG domain-containing protein | - |
| IE322_RS18070 (IE322_18070) | - | 3961330..3962484 (-) | 1155 | WP_191471986.1 | Fic family protein | - |
| IE322_RS18080 (IE322_18080) | pilA | 3962882..3963292 (-) | 411 | WP_191471987.1 | pilin | Machinery gene |
| IE322_RS18085 (IE322_18085) | - | 3963509..3964717 (+) | 1209 | WP_191471988.1 | type II secretion system F family protein | - |
| IE322_RS18090 (IE322_18090) | pilD | 3964720..3965586 (+) | 867 | WP_191471989.1 | A24 family peptidase | Machinery gene |
| IE322_RS18095 (IE322_18095) | coaE | 3965586..3966209 (+) | 624 | WP_100413056.1 | dephospho-CoA kinase | - |
| IE322_RS18100 (IE322_18100) | yacG | 3966206..3966406 (+) | 201 | WP_003260624.1 | DNA gyrase inhibitor YacG | - |
| IE322_RS18105 (IE322_18105) | - | 3966644..3967351 (-) | 708 | WP_191471990.1 | energy-coupling factor ABC transporter permease | - |
| IE322_RS18110 (IE322_18110) | - | 3967438..3967869 (+) | 432 | WP_015268860.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 13825.12 Da Isoelectric Point: 7.0812
>NTDB_id=485101 IE322_RS18080 WP_191471987.1 3962882..3963292(-) (pilA) [Pseudomonas asiatica strain C3]
MKGQRGITLIELMIVVAIIGILATIALPMYTNHQSRSKAAAGLLEINALKTAMDLRLNDGKDVPDVAALGGQPATAHCAI
TASGKAADGTGSIVCTLVDAPATVLGKALTLTRSATGWGCTTDIEEDLAPKGCKAP
MKGQRGITLIELMIVVAIIGILATIALPMYTNHQSRSKAAAGLLEINALKTAMDLRLNDGKDVPDVAALGGQPATAHCAI
TASGKAADGTGSIVCTLVDAPATVLGKALTLTRSATGWGCTTDIEEDLAPKGCKAP
Nucleotide
Download Length: 411 bp
>NTDB_id=485101 IE322_RS18080 WP_191471987.1 3962882..3963292(-) (pilA) [Pseudomonas asiatica strain C3]
ATGAAAGGGCAACGCGGTATCACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGGCATTCTGGCGACCATCGCCTT
ACCGATGTACACCAACCACCAGTCACGCTCCAAGGCCGCGGCCGGGTTGCTGGAGATCAACGCGCTGAAGACGGCGATGG
ACCTGCGGTTGAATGACGGGAAGGATGTGCCGGATGTGGCCGCGCTGGGTGGCCAGCCGGCGACTGCGCACTGTGCGATC
ACGGCTAGCGGCAAGGCGGCGGATGGCACTGGGAGCATCGTTTGTACGCTGGTGGATGCGCCGGCCACTGTGCTGGGCAA
GGCACTGACCCTGACGCGTTCGGCTACTGGCTGGGGGTGTACTACCGATATCGAGGAAGATCTGGCGCCGAAGGGGTGCA
AGGCGCCTTGA
ATGAAAGGGCAACGCGGTATCACCCTGATCGAACTGATGATCGTCGTCGCGATCATCGGCATTCTGGCGACCATCGCCTT
ACCGATGTACACCAACCACCAGTCACGCTCCAAGGCCGCGGCCGGGTTGCTGGAGATCAACGCGCTGAAGACGGCGATGG
ACCTGCGGTTGAATGACGGGAAGGATGTGCCGGATGTGGCCGCGCTGGGTGGCCAGCCGGCGACTGCGCACTGTGCGATC
ACGGCTAGCGGCAAGGCGGCGGATGGCACTGGGAGCATCGTTTGTACGCTGGTGGATGCGCCGGCCACTGTGCTGGGCAA
GGCACTGACCCTGACGCGTTCGGCTACTGGCTGGGGGTGTACTACCGATATCGAGGAAGATCTGGCGCCGAAGGGGTGCA
AGGCGCCTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Pseudomonas aeruginosa PAK |
43.421 |
100 |
0.485 |
| pilA | Acinetobacter baumannii strain A118 |
43.165 |
100 |
0.441 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.963 |
99.265 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.647 |
100 |
0.426 |
| comP | Acinetobacter baylyi ADP1 |
37.838 |
100 |
0.412 |
| pilA | Vibrio cholerae C6706 |
37.063 |
100 |
0.39 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.063 |
100 |
0.39 |
| pilA | Vibrio cholerae strain A1552 |
37.063 |
100 |
0.39 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.231 |
95.588 |
0.375 |