Detailed information NTG0485102

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IE322_RS18090
• Genome accession: NZ_CP061848
• Coordinates: 3964720..3965586 (+)
• Length: 288 a.a.
• NCBI ID: WP_191471989.1
• Uniprot ID: -
• Organism: Pseudomonas asiatica strain C3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3959720..3970586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IE322_RS18070 (IE322_18070)	-	3961330..3962484 (-)	1155	WP_191471986.1	Fic family protein	-
IE322_RS18080 (IE322_18080)	pilA	3962882..3963292 (-)	411	WP_191471987.1	pilin	Machinery gene
IE322_RS18085 (IE322_18085)	-	3963509..3964717 (+)	1209	WP_191471988.1	type II secretion system F family protein	-
IE322_RS18090 (IE322_18090)	pilD	3964720..3965586 (+)	867	WP_191471989.1	A24 family peptidase	Machinery gene
IE322_RS18095 (IE322_18095)	coaE	3965586..3966209 (+)	624	WP_100413056.1	dephospho-CoA kinase	-
IE322_RS18100 (IE322_18100)	yacG	3966206..3966406 (+)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
IE322_RS18105 (IE322_18105)	-	3966644..3967351 (-)	708	WP_191471990.1	energy-coupling factor ABC transporter permease	-
IE322_RS18110 (IE322_18110)	-	3967438..3967869 (+)	432	WP_015268860.1	hypothetical protein	-
IE322_RS18115 (IE322_18115)	-	3967925..3968554 (+)	630	WP_013970766.1	DUF1780 domain-containing protein	-
IE322_RS18120 (IE322_18120)	-	3968688..3968861 (+)	174	WP_013970765.1	DUF3094 family protein	-
IE322_RS18125 (IE322_18125)	-	3968946..3970241 (+)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32059.27 Da
• Isoelectric Point: 7.9596

>NTDB_id=485102 IE322_RS18090 WP_191471989.1 3964720..3965586(+) (pilD) [Pseudomonas asiatica strain C3]
MTLWTLLAEQPVYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=485102 IE322_RS18090 WP_191471989.1 3964720..3965586(+) (pilD) [Pseudomonas asiatica strain C3]
ATGACCTTATGGACTTTGCTGGCTGAGCAGCCGGTGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTTTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGTACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Acinetobacter baumannii D1279779	53.585	92.014	0.493
pilD	Acinetobacter nosocomialis M2	52.83	92.014	0.486
pilD	Neisseria gonorrhoeae MS11	50.929	93.403	0.476