Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IF132_RS14075 Genome accession   NZ_CP061845
Coordinates   1853862..1854965 (-) Length   367 a.a.
NCBI ID   WP_039422445.1    Uniprot ID   A0A099LQP0
Organism   Vibrio navarrensis strain 2540-90     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1848862..1859965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF132_RS14045 (IF132_15090) hemF 1849400..1850317 (-) 918 WP_039422458.1 oxygen-dependent coproporphyrinogen oxidase -
  IF132_RS14050 (IF132_15095) - 1850347..1850904 (-) 558 WP_039422456.1 L-threonylcarbamoyladenylate synthase -
  IF132_RS14055 (IF132_15100) purE 1851089..1851574 (+) 486 WP_039422454.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IF132_RS14060 (IF132_15105) - 1851579..1852712 (+) 1134 WP_039422452.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IF132_RS14065 (IF132_15110) - 1852780..1853358 (-) 579 WP_039422450.1 type I DNA topoisomerase -
  IF132_RS14070 (IF132_15115) - 1853380..1853859 (-) 480 WP_039422448.1 DUF494 family protein -
  IF132_RS14075 (IF132_15120) dprA 1853862..1854965 (-) 1104 WP_039422445.1 DNA-processing protein DprA Machinery gene
  IF132_RS14080 (IF132_15125) - 1854965..1856062 (-) 1098 WP_039422444.1 LysM peptidoglycan-binding domain-containing protein -
  IF132_RS14085 (IF132_15130) def 1856201..1856713 (+) 513 WP_039422442.1 peptide deformylase -
  IF132_RS14090 (IF132_15135) fmt 1856747..1857694 (+) 948 WP_039422440.1 methionyl-tRNA formyltransferase -
  IF132_RS14095 (IF132_15140) rsmB 1857773..1859053 (+) 1281 WP_039422439.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39754.26 Da        Isoelectric Point: 6.0459

>NTDB_id=485043 IF132_RS14075 WP_039422445.1 1853862..1854965(-) (dprA) [Vibrio navarrensis strain 2540-90]
MSEQELIAWLSLSFTPQIGAKRLAKLLSIDAPLNILSYSDNALHNLGFSIAQLAYLRQEARRDVEAALTWQLQQDHHILT
LADDNYPPLLKEAGAAPPYLFVKGEVGALSKPQLAMVGSRNASLEGLQHARQFAEFLVQQGLAVTSGLALGIDGHAHDGA
LSAGGDTIAVLGSGLEHIYPARHRKLAQRIAENGALVSEFRPDAKPRAENFPRRNRIISGLALGVLVVEAAEKSGSLITA
RYAAEQGREVFALPCSISSVNGRGGNQLIKNGACLVSEPNDILREIQSLLDWSYQQQTRDLFSPLNTEEQLPFPELLANV
GSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAINGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=485043 IF132_RS14075 WP_039422445.1 1853862..1854965(-) (dprA) [Vibrio navarrensis strain 2540-90]
ATGTCAGAGCAAGAGCTGATTGCTTGGTTAAGTTTAAGTTTTACGCCGCAGATTGGCGCAAAACGACTAGCCAAGTTACT
CAGTATTGATGCTCCACTCAATATTCTCTCCTACTCAGATAATGCTTTACACAACTTGGGGTTTTCGATTGCTCAACTGG
CTTATCTGCGGCAAGAGGCTCGCCGCGATGTGGAAGCGGCGCTGACTTGGCAGTTGCAACAAGATCATCACATTCTCACC
TTAGCCGACGACAATTATCCGCCACTGCTTAAAGAAGCTGGAGCCGCGCCGCCTTATCTGTTTGTTAAAGGGGAGGTGGG
CGCACTGAGCAAGCCGCAACTTGCGATGGTTGGTAGTCGTAATGCCAGCCTAGAGGGGCTGCAGCATGCTCGGCAGTTTG
CGGAGTTTTTAGTTCAACAGGGGCTTGCAGTGACCAGTGGTTTAGCGCTGGGTATTGATGGCCACGCTCACGATGGCGCA
CTCAGTGCAGGTGGTGACACCATCGCCGTGCTCGGCTCAGGGTTGGAACACATTTATCCCGCTCGCCACCGCAAGCTGGC
GCAACGAATCGCCGAGAACGGCGCGTTGGTGTCTGAATTTCGCCCTGATGCCAAACCCCGCGCAGAAAACTTCCCTCGCC
GTAATCGCATTATCAGTGGCTTAGCGCTGGGGGTGTTGGTTGTGGAAGCGGCGGAAAAAAGCGGCTCACTCATTACCGCT
CGTTATGCGGCAGAGCAAGGGCGAGAAGTCTTTGCGCTGCCGTGTTCGATCTCTTCGGTGAATGGTCGAGGCGGCAACCA
ACTGATCAAAAACGGGGCGTGCTTAGTCTCTGAGCCCAATGACATCTTGCGTGAAATACAATCGTTACTGGATTGGTCTT
ATCAGCAGCAGACGAGAGATTTATTTTCTCCACTTAATACCGAAGAACAATTGCCATTTCCTGAGCTGTTAGCTAACGTA
GGAAGTGAGGCGACACCAGTTGATATTCTGGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCCTAGA
GCTTGAGCTTTCAGGACATGTTGTTGCAATTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(74-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099LQP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

71.978

99.183

0.714
  dprA Vibrio cholerae strain A1552

56.873

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.757

100

0.471
  dprA Haemophilus influenzae Rd KW20

44.142

100

0.441
  dprA Neisseria meningitidis strain C311

39.552

100

0.433
  dprA Neisseria meningitidis MC58

39.552

100

0.433
  dprA Neisseria gonorrhoeae MS11

38.5

100

0.42
  dprA Neisseria gonorrhoeae strain FA1090

38.25

100

0.417
  dprA Legionella pneumophila strain ERS1305867

47.176

82.016

0.387
  dprA Acinetobacter baumannii strain A118

45.946

80.654

0.371
  dprA Acinetobacter baumannii D1279779

45.27

80.654

0.365