Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC769_RS16725 Genome accession   NZ_CP061672
Coordinates   3559901..3561127 (+) Length   408 a.a.
NCBI ID   WP_019456773.1    Uniprot ID   A0A7H2PQF8
Organism   Acinetobacter seifertii strain AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3554901..3566127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS16690 (IC769_16690) rimP 3555573..3556097 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  IC769_RS16710 (IC769_16710) secG 3556735..3557064 (-) 330 WP_019456770.1 preprotein translocase subunit SecG -
  IC769_RS16715 (IC769_16715) tpiA 3557077..3557871 (-) 795 WP_151749678.1 triose-phosphate isomerase -
  IC769_RS16720 (IC769_16720) pilB 3558161..3559873 (+) 1713 WP_191108803.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC769_RS16725 (IC769_16725) pilC 3559901..3561127 (+) 1227 WP_019456773.1 type II secretion system F family protein Machinery gene
  IC769_RS16730 (IC769_16730) pilD 3561127..3561987 (+) 861 WP_191108804.1 A24 family peptidase Machinery gene
  IC769_RS16735 (IC769_16735) coaE 3561989..3562585 (+) 597 WP_191108805.1 dephospho-CoA kinase -
  IC769_RS16740 (IC769_16740) - 3562582..3563496 (-) 915 WP_191108806.1 DMT family transporter -
  IC769_RS16745 (IC769_16745) rlmB 3563532..3564281 (-) 750 WP_191108807.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC769_RS16750 (IC769_16750) - 3564384..3564710 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.62 Da        Isoelectric Point: 10.0201

>NTDB_id=484019 IC769_RS16725 WP_019456773.1 3559901..3561127(+) (pilC) [Acinetobacter seifertii strain AS23]
MAVKKAQMMPTFAYEGVDRKGLKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEIEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAFGAIII
AFLEAKKRSKKFRDGLDKLALKLPIFGNLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=484019 IC769_RS16725 WP_019456773.1 3559901..3561127(+) (pilC) [Acinetobacter seifertii strain AS23]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCTTAAAAATTAAGGGGGA
ACTTCCAGCTAAAAATATGGCTTTAGCTAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTTGATATTACTATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAATCCAGCCATGCGTGAGGT
AGTACTTGGTATTAAAGGTGAAATTGAGGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAGTATCCGCAACATTTTGACA
ATTTATTTTGTTCACTTGTGGAATCTGGAGAACAATCAGGCGCTCTCGAAACCATGCTAGATCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCAATGAAATATCCGGCCACGGTTATTGTAGTAGCGATTGTGGT
GACTATTATTTTGATGGTTAAAGTCGTACCCGTTTTCCAAGATCTGTTTTCTTCATTTGGAGCAGAATTACCAGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAAGAATATTGGTTCATCATGATTATTGCATTTGGCGCAATTATTATA
GCCTTTTTAGAAGCTAAAAAACGTAGTAAAAAGTTTAGAGATGGCTTAGATAAACTGGCGCTCAAATTACCTATTTTTGG
GAACTTGGTCTATAAAGCAATTATTGCCCGTTATAGCCGGACACTTGCCACAACATTTGCAGCAGGTGTTCCGCTCATTG
ATGCACTTGAGTCGACTGCTGGTGCAACCAATAATGTCATCTATGAAAAAGCCGTTATGAAAATTCGTGAAGATGTAGCA
ACAGGACAACAACTTCAGTTTGCCATGCGTGTATCTAACCGTTTTCCTTCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTTGATAAAGTGGCTACCTATTATGAAAATGAAGTTGATAATGCAGTTGATGGTT
TAACTGCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTGGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PQF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

46.867

97.794

0.458
  pilG Neisseria gonorrhoeae MS11

46.867

97.794

0.458
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.447

98.775

0.4
  pilC Thermus thermophilus HB27

37.157

98.284

0.365