Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PPUBIRD1_RS18875 Genome accession   NC_017530
Coordinates   4175927..4178143 (-) Length   738 a.a.
NCBI ID   WP_041167186.1    Uniprot ID   -
Organism   Pseudomonas putida BIRD-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4170927..4183143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPUBIRD1_RS18840 (PPUBIRD1_3720) murB 4171234..4172253 (-) 1020 WP_014591933.1 UDP-N-acetylmuramate dehydrogenase -
  PPUBIRD1_RS18845 (PPUBIRD1_3721) - 4172250..4172714 (-) 465 WP_014591934.1 low molecular weight protein-tyrosine-phosphatase -
  PPUBIRD1_RS18850 (PPUBIRD1_3722) kdsB 4172714..4173478 (-) 765 WP_014591935.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PPUBIRD1_RS18855 (PPUBIRD1_3723) - 4173475..4173660 (-) 186 WP_003247142.1 Trm112 family protein -
  PPUBIRD1_RS18860 (PPUBIRD1_3724) lpxK 4173705..4174706 (-) 1002 WP_014591936.1 tetraacyldisaccharide 4'-kinase -
  PPUBIRD1_RS18865 (PPUBIRD1_3725) - 4174706..4175140 (-) 435 WP_014591937.1 biopolymer transporter ExbD -
  PPUBIRD1_RS18870 (PPUBIRD1_3726) exbB 4175137..4175772 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PPUBIRD1_RS18875 (PPUBIRD1_3727) comA 4175927..4178143 (-) 2217 WP_041167186.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PPUBIRD1_RS26540 - 4178286..4178918 (+) 633 WP_019437414.1 DUF2062 domain-containing protein -
  PPUBIRD1_RS18880 (PPUBIRD1_3729) - 4178802..4179581 (-) 780 WP_003247128.1 ABC transporter permease -
  PPUBIRD1_RS18885 (PPUBIRD1_3730) - 4179578..4180510 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  PPUBIRD1_RS18890 (PPUBIRD1_3731) - 4180644..4181267 (-) 624 WP_014591940.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79580.41 Da        Isoelectric Point: 10.1006

>NTDB_id=48245 PPUBIRD1_RS18875 WP_041167186.1 4175927..4178143(-) (comA) [Pseudomonas putida BIRD-1]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGVFFPLLVALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPLWAWLLVCLGALLILLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVFLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHSGGAG
AIQRGLPIKRIIGGEALVDVPLQPCVSGEQWDWDGVRFSLWRWVDGESSNDRSCVLLVEAQGERLLLAGDIEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=48245 PPUBIRD1_RS18875 WP_041167186.1 4175927..4178143(-) (comA) [Pseudomonas putida BIRD-1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTTCCTGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCACTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAAGGG
CGGGTGGCGGGTTTGCCGGCCCGCACAGCACAAGGCGTGCGTTTCGAACTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCTTGCAACTGAGCTGGTTCGACGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGCGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCCTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTGCAGCGGGCCTGCCTGATGCTAGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGTTTTTTTTCCGTTGCTGGTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGATTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGTTTGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGCTGGCGGTGTTTTTGCG
TACGCGGCATCACAGCCTCCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATTCGGGCGGGGCCGGA
GCCATCCAGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGTCAG
TGGCGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGGAGAGCAGTAATGACCGTTCCT
GTGTCTTGTTGGTCGAAGCGCAGGGTGAGCGCTTGCTGCTGGCAGGGGATATCGAGGCTGCTGCCGAAAGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCATCCGCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGAGTGGTGATGCATGATACGGCAGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGTGGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.807

97.696

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.694

100

0.369

Multiple sequence alignment