Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PPUBIRD1_RS18870 Genome accession   NC_017530
Coordinates   4175137..4175772 (-) Length   211 a.a.
NCBI ID   WP_026031862.1    Uniprot ID   A0AA34WU07
Organism   Pseudomonas putida BIRD-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4170137..4180772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPUBIRD1_RS18840 (PPUBIRD1_3720) murB 4171234..4172253 (-) 1020 WP_014591933.1 UDP-N-acetylmuramate dehydrogenase -
  PPUBIRD1_RS18845 (PPUBIRD1_3721) - 4172250..4172714 (-) 465 WP_014591934.1 low molecular weight protein-tyrosine-phosphatase -
  PPUBIRD1_RS18850 (PPUBIRD1_3722) kdsB 4172714..4173478 (-) 765 WP_014591935.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PPUBIRD1_RS18855 (PPUBIRD1_3723) - 4173475..4173660 (-) 186 WP_003247142.1 Trm112 family protein -
  PPUBIRD1_RS18860 (PPUBIRD1_3724) lpxK 4173705..4174706 (-) 1002 WP_014591936.1 tetraacyldisaccharide 4'-kinase -
  PPUBIRD1_RS18865 (PPUBIRD1_3725) - 4174706..4175140 (-) 435 WP_014591937.1 biopolymer transporter ExbD -
  PPUBIRD1_RS18870 (PPUBIRD1_3726) exbB 4175137..4175772 (-) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PPUBIRD1_RS18875 (PPUBIRD1_3727) comA 4175927..4178143 (-) 2217 WP_041167186.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PPUBIRD1_RS26540 - 4178286..4178918 (+) 633 WP_019437414.1 DUF2062 domain-containing protein -
  PPUBIRD1_RS18880 (PPUBIRD1_3729) - 4178802..4179581 (-) 780 WP_003247128.1 ABC transporter permease -
  PPUBIRD1_RS18885 (PPUBIRD1_3730) - 4179578..4180510 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.20 Da        Isoelectric Point: 7.3616

>NTDB_id=48244 PPUBIRD1_RS18870 WP_026031862.1 4175137..4175772(-) (exbB) [Pseudomonas putida BIRD-1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=48244 PPUBIRD1_RS18870 WP_026031862.1 4175137..4175772(-) (exbB) [Pseudomonas putida BIRD-1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTCGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGCATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGTTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment