Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | D39N_RS08580 | Genome accession | NZ_CP061208 |
| Coordinates | 1712427..1712822 (-) | Length | 131 a.a. |
| NCBI ID | WP_000282467.1 | Uniprot ID | A0A098Z0L0 |
| Organism | Streptococcus pneumoniae strain D39_P0 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1707427..1717822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D39N_RS08555 (D39N_01716) | - | 1707768..1708301 (+) | 534 | WP_000775321.1 | DUF402 domain-containing protein | - |
| D39N_RS08560 (D39N_01717) | - | 1708655..1708861 (-) | 207 | WP_000775827.1 | transcriptional regulator | - |
| D39N_RS08565 (D39N_01718) | - | 1709021..1710250 (+) | 1230 | WP_000436473.1 | ISL3 family transposase | - |
| D39N_RS08570 (D39N_01719) | groL | 1710349..1711971 (-) | 1623 | WP_000031573.1 | chaperonin GroEL | - |
| D39N_RS08575 (D39N_01720) | groES | 1711987..1712271 (-) | 285 | WP_000917304.1 | co-chaperone GroES | - |
| D39N_RS08580 (D39N_01721) | ssbB/cilA | 1712427..1712822 (-) | 396 | WP_000282467.1 | single-stranded DNA-binding protein | Machinery gene |
| D39N_RS08585 (D39N_01722) | - | 1712900..1713661 (-) | 762 | WP_001107755.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| D39N_RS08590 (D39N_01723) | ytpR | 1713694..1714320 (-) | 627 | WP_000578309.1 | YtpR family tRNA-binding protein | - |
| D39N_RS08595 (D39N_01724) | - | 1714336..1714653 (-) | 318 | WP_000615767.1 | thioredoxin family protein | - |
| D39N_RS08600 (D39N_01725) | - | 1714650..1714949 (-) | 300 | WP_001013974.1 | DUF4651 domain-containing protein | - |
| D39N_RS10850 | - | 1715043..1715174 (+) | 132 | WP_001811306.1 | hypothetical protein | - |
| D39N_RS10670 | - | 1715199..1715279 (-) | 81 | WP_223200442.1 | hypothetical protein | - |
| D39N_RS08605 | - | 1715286..1715477 (-) | 192 | WP_000291826.1 | cell wall-binding protein | - |
| D39N_RS08610 (D39N_01726) | - | 1715638..1716312 (-) | 675 | WP_000725742.1 | membrane protein | - |
| D39N_RS08615 (D39N_01727) | - | 1716318..1716764 (-) | 447 | WP_000776587.1 | LytTR family DNA-binding domain-containing protein | - |
| D39N_RS08620 (D39N_01728) | - | 1716878..1717381 (-) | 504 | WP_000800927.1 | phosphatase PAP2 family protein | - |
| D39N_RS08625 (D39N_01729) | - | 1717378..1717740 (-) | 363 | WP_000078805.1 | DUF2200 domain-containing protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14925.89 Da Isoelectric Point: 5.9409
>NTDB_id=481417 D39N_RS08580 WP_000282467.1 1712427..1712822(-) (ssbB/cilA) [Streptococcus pneumoniae strain D39_P0]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=481417 D39N_RS08580 WP_000282467.1 1712427..1712822(-) (ssbB/cilA) [Streptococcus pneumoniae strain D39_P0]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae D39 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
98.473 |
100 |
0.985 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
98.473 |
100 |
0.985 |
| ssbA | Streptococcus mutans UA159 |
74.809 |
100 |
0.748 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.229 |
100 |
0.702 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
59.821 |
85.496 |
0.511 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.903 |
86.26 |
0.405 |