Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IB936_RS00680 Genome accession   NZ_CP061133
Coordinates   109726..110121 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 104726..115121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB936_RS00650 (IB936_00650) - 105591..105899 (+) 309 WP_011528165.1 hypothetical protein -
  IB936_RS00655 (IB936_00655) proC 105982..106752 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  IB936_RS00660 (IB936_00660) pepA 106800..107867 (-) 1068 WP_011528166.1 glutamyl aminopeptidase -
  IB936_RS00665 (IB936_00665) - 108332..108616 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  IB936_RS00670 (IB936_00670) - 108613..108930 (+) 318 WP_011528167.1 thioredoxin family protein -
  IB936_RS00675 (IB936_00675) ytpR 108948..109574 (+) 627 WP_011528168.1 YtpR family tRNA-binding protein -
  IB936_RS00680 (IB936_00680) ssbA 109726..110121 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  IB936_RS00685 (IB936_00685) - 110381..111022 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  IB936_RS00690 (IB936_00690) dusB 111042..112019 (-) 978 WP_021299420.1 tRNA dihydrouridine synthase DusB -
  IB936_RS00695 (IB936_00695) hslO 112006..112878 (-) 873 WP_011528170.1 Hsp33 family molecular chaperone HslO -
  IB936_RS00700 (IB936_00700) rofA 113025..114518 (-) 1494 WP_021299438.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=480909 IB936_RS00680 WP_003053955.1 109726..110121(+) (ssbA) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=480909 IB936_RS00680 WP_003053955.1 109726..110121(+) (ssbA) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397