Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IAU63_RS11805 Genome accession   NZ_CP061030
Coordinates   2468702..2469025 (-) Length   107 a.a.
NCBI ID   WP_015729165.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain Z0118SP0108     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2463702..2474025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU63_RS11775 gcvPA 2464286..2465635 (-) 1350 WP_014613828.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IAU63_RS11780 gcvT 2465648..2466739 (-) 1092 WP_015729161.1 glycine cleavage system aminomethyltransferase GcvT -
  IAU63_RS11785 - 2466897..2467424 (-) 528 WP_014613826.1 shikimate kinase -
  IAU63_RS11790 - 2467588..2467953 (-) 366 WP_241731293.1 hypothetical protein -
  IAU63_RS11795 - 2467979..2468212 (-) 234 WP_014613824.1 hypothetical protein -
  IAU63_RS11800 comGD 2468284..2468745 (-) 462 WP_241735330.1 competence type IV pilus minor pilin ComGD -
  IAU63_RS11805 comGC 2468702..2469025 (-) 324 WP_015729165.1 competence type IV pilus major pilin ComGC Machinery gene
  IAU63_RS11810 comGB 2469038..2470105 (-) 1068 WP_015729166.1 competence type IV pilus assembly protein ComGB -
  IAU63_RS11815 comGA 2470074..2471048 (-) 975 WP_014613820.1 competence type IV pilus ATPase ComGA Machinery gene
  IAU63_RS11820 - 2471208..2471837 (-) 630 WP_015729230.1 MBL fold metallo-hydrolase -
  IAU63_RS11825 - 2471850..2472161 (-) 312 WP_015729231.1 MTH1187 family thiamine-binding protein -
  IAU63_RS11830 - 2472162..2473148 (-) 987 WP_014613817.1 ROK family glucokinase -
  IAU63_RS11835 - 2473145..2473348 (-) 204 WP_014613816.1 YqgQ family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12027.26 Da        Isoelectric Point: 9.0966

>NTDB_id=479911 IAU63_RS11805 WP_015729165.1 2468702..2469025(-) (comGC) [Staphylococcus pseudintermedius strain Z0118SP0108]
MIQQLKLKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEEITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=479911 IAU63_RS11805 WP_015729165.1 2468702..2469025(-) (comGC) [Staphylococcus pseudintermedius strain Z0118SP0108]
ATGATTCAACAACTTAAATTAAAATTCAACAAAAAGAAAGGTTTTACATTAATTGAAATGCTACTTGTTCTGTTAATTAT
TAGTGTACTATTGATTCTCATTATCCCGAATATTGCTAAGCAGTCAGATCATATCCAAAAAACGGGTTGTGCTGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGAGATCACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

73.529

95.327

0.701
  comGC Staphylococcus aureus N315

73.529

95.327

0.701
  comGC/cglC Streptococcus mitis SK321

44.898

91.589

0.411
  comGC/cglC Streptococcus pneumoniae D39

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae TIGR4

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae Rx1

43.878

91.589

0.402
  comGC/cglC Streptococcus pneumoniae R6

43.878

91.589

0.402
  comYC Streptococcus suis isolate S10

53.846

72.897

0.393
  comYC Streptococcus gordonii str. Challis substr. CH1

49.398

77.57

0.383
  comGC Bacillus subtilis subsp. subtilis str. 168

44.565

85.981

0.383
  comGC/cglC Streptococcus mitis NCTC 12261

48.78

76.636

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

48.78

76.636

0.374