Detailed information NTG0479727

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: IBB96_RS08890
• Genome accession: NZ_CP061023
• Coordinates: 1719872..1720300 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 13499
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1714872..1725300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBB96_RS08850 (IBB96_08875)	-	1715009..1715452 (-)	444	WP_011681680.1	hypothetical protein	-
IBB96_RS10360	-	1715526..1715951 (-)	426	WP_014608739.1	CPBP family intramembrane glutamic endopeptidase	-
IBB96_RS10365	-	1715908..1716183 (-)	276	WP_011681681.1	hypothetical protein	-
IBB96_RS08860 (IBB96_08885)	-	1716195..1716392 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
IBB96_RS08865 (IBB96_08890)	-	1716641..1717834 (-)	1194	WP_014608740.1	acetate kinase	-
IBB96_RS08870 (IBB96_08895)	comYH	1717890..1718846 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
IBB96_RS08875 (IBB96_08900)	comGG	1718891..1719208 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
IBB96_RS08880 (IBB96_08905)	comYF	1719186..1719623 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
IBB96_RS08885 (IBB96_08910)	comGE	1719607..1719900 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
IBB96_RS08890 (IBB96_08915)	comYD	1719872..1720300 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
IBB96_RS08895 (IBB96_08920)	comYC	1720260..1720586 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
IBB96_RS08900 (IBB96_08925)	comYB	1720583..1721683 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
IBB96_RS08905 (IBB96_08930)	comGA/cglA/cilD	1721565..1722506 (-)	942	WP_014608745.1	competence type IV pilus ATPase ComGA	Machinery gene
IBB96_RS08910 (IBB96_08935)	-	1722587..1722949 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=479727 IBB96_RS08890 WP_011226626.1 1719872..1720300(-) (comYD) [Streptococcus thermophilus strain 13499]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=479727 IBB96_RS08890 WP_011226626.1 1719872..1720300(-) (comYD) [Streptococcus thermophilus strain 13499]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38