Detailed information NTG0479494

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: IBC08_RS08670
• Genome accession: NZ_CP061019
• Coordinates: 1681318..1681710 (-)
• Length: 130 a.a.
• NCBI ID: WP_011226610.1
• Uniprot ID: A0A3G6K2H6
• Organism: Streptococcus thermophilus strain 24853
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1676318..1686710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC08_RS08640 (IBC08_08610)	dapD	1676597..1677295 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
IBC08_RS10400 (IBC08_08615)	-	1677381..1678135 (-)	755	Protein_1661	HAD family hydrolase	-
IBC08_RS08650 (IBC08_08620)	-	1678250..1679083 (-)	834	WP_014608733.1	putative RNA methyltransferase	-
IBC08_RS08660 (IBC08_08630)	-	1679452..1679644 (+)	193	Protein_1663	class IIb bacteriocin, lactobin A/cerein 7B family	-
IBC08_RS10405	-	1679697..1679960 (+)	264	WP_014608734.1	hypothetical protein	-
IBC08_RS08665 (IBC08_08635)	tadA	1680041..1680559 (-)	519	WP_014608735.1	tRNA adenosine(34) deaminase TadA	-
IBC08_RS08670 (IBC08_08640)	ssbA	1681318..1681710 (-)	393	WP_011226610.1	single-stranded DNA-binding protein	Machinery gene
IBC08_RS08675 (IBC08_08645)	-	1681916..1682143 (-)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
IBC08_RS08680 (IBC08_08650)	-	1682158..1683189 (-)	1032	WP_207563289.1	YeeE/YedE family protein	-
IBC08_RS08685 (IBC08_08655)	ytpR	1683327..1683950 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
IBC08_RS08690 (IBC08_08660)	-	1683960..1684274 (-)	315	WP_011226613.1	thioredoxin family protein	-
IBC08_RS08695 (IBC08_08665)	-	1684271..1684555 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
IBC08_RS08700 (IBC08_08670)	pepA	1684655..1685722 (+)	1068	WP_014727717.1	glutamyl aminopeptidase	-
IBC08_RS08705 (IBC08_08675)	proC	1685738..1686514 (+)	777	WP_207563290.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=479494 IBC08_RS08670 WP_011226610.1 1681318..1681710(-) (ssbA) [Streptococcus thermophilus strain 24853]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=479494 IBC08_RS08670 WP_011226610.1 1681318..1681710(-) (ssbA) [Streptococcus thermophilus strain 24853]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A3G6K2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.769
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377