Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H9L24_RS19960 Genome accession   NZ_CP060790
Coordinates   4197815..4199032 (-) Length   405 a.a.
NCBI ID   WP_187736096.1    Uniprot ID   A0A7H0HEZ5
Organism   Paenacidovorax monticola strain KACC 19171     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4192815..4204032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L24_RS19930 (H9L24_19930) - 4193922..4194794 (+) 873 WP_187736090.1 ATP-binding protein -
  H9L24_RS19935 (H9L24_19935) - 4194787..4195224 (+) 438 WP_246483502.1 NUDIX domain-containing protein -
  H9L24_RS19940 (H9L24_19940) - 4195271..4195480 (-) 210 WP_187736092.1 DNA gyrase inhibitor YacG -
  H9L24_RS19945 (H9L24_19945) zapD 4195494..4196249 (-) 756 WP_187736093.1 cell division protein ZapD -
  H9L24_RS19950 (H9L24_19950) coaE 4196326..4196934 (-) 609 WP_187736094.1 dephospho-CoA kinase -
  H9L24_RS19955 (H9L24_19955) pilD 4196937..4197815 (-) 879 WP_187736095.1 A24 family peptidase Machinery gene
  H9L24_RS19960 (H9L24_19960) pilC 4197815..4199032 (-) 1218 WP_187736096.1 type II secretion system F family protein Machinery gene
  H9L24_RS19965 (H9L24_19965) pilB 4199071..4200807 (-) 1737 WP_187736097.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9L24_RS19975 (H9L24_19975) - 4201044..4201973 (-) 930 WP_187738411.1 polyprenyl synthetase family protein -
  H9L24_RS19980 (H9L24_19980) rplU 4202187..4202498 (+) 312 WP_187736098.1 50S ribosomal protein L21 -
  H9L24_RS19985 (H9L24_19985) rpmA 4202511..4202768 (+) 258 WP_187736099.1 50S ribosomal protein L27 -
  H9L24_RS19990 (H9L24_19990) cgtA 4202926..4203996 (+) 1071 WP_187736100.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44664.54 Da        Isoelectric Point: 9.2066

>NTDB_id=478350 H9L24_RS19960 WP_187736096.1 4197815..4199032(-) (pilC) [Paenacidovorax monticola strain KACC 19171]
MATAASRDIKDFVFEWEGKDRNGKIVRGETRASGENQVQAMLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNASVTKLLNDIRADVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDVFVKWWWLIFGVIGGSFFFFM
QAWRRNEKMQIFMDRLLLRLPIFGDLINKSCVARWTRTLSTMFAAGVPLVEALDSVGGAAGNSVYSMATDKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=478350 H9L24_RS19960 WP_187736096.1 4197815..4199032(-) (pilC) [Paenacidovorax monticola strain KACC 19171]
ATGGCCACCGCCGCATCCAGAGACATCAAGGACTTCGTCTTCGAGTGGGAAGGCAAGGACCGCAATGGCAAGATCGTCCG
TGGAGAAACACGCGCCTCGGGCGAAAACCAGGTCCAGGCCATGCTGCGGCGCCAGGGGGTCTTCCCGACCAAGATCAAGA
AGCGGCGCATGCGCTCGGGCAAGAAGATCAAGCCCAAGGACATCGCCCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTGCCTCTGCTGCAGGCCTTCGACATCGTGGGCCGTGGCAACACCAATGCCAGCGTGACCAAGCTGCTCAACGA
CATCCGCGCCGACGTGGAAACGGGCACGTCGCTGAACGCCGCATTCCGCAAGTACCCCATGTACTTCGACAGCCTGTATT
GCAACCTCGTGGAGGCAGGCGAAGCAGCCGGTATTCTCGAGGCGCTGCTGGACCGACTGGCCACGTACATGGAGAAAACC
GAGGCGATCAAGTCCAAGATCAAATCGGCCTTGATGTACCCCATCTCCGTGATCATCGTGGCTTTCGTGGTGGTCACGGT
GATCATGATCTTCGTGATTCCGGCGTTCAAAGAGGTTTTCACCTCTTTCGGGGCGGACTTGCCTGCACCCACATTGTTCG
TGATGGGCATCAGCGATGTTTTCGTGAAGTGGTGGTGGCTGATCTTCGGCGTGATCGGTGGCAGCTTCTTCTTCTTCATG
CAGGCCTGGCGCCGCAATGAGAAGATGCAGATATTCATGGACCGGTTGCTGTTGCGCCTACCCATCTTCGGTGATCTCAT
CAACAAGTCTTGCGTGGCACGCTGGACACGCACCCTGTCCACCATGTTTGCAGCTGGCGTGCCACTTGTGGAAGCCCTTG
ACTCTGTTGGTGGTGCCGCTGGTAACTCGGTCTACAGCATGGCCACTGACAAGATCCAGCAGGAAGTATCCACGGGCACC
AGCCTCACGGCAGCGATGGGCAATGCGAATGTTTTTCCCTCTATGGTGCTACAGATGTGCGCGATCGGGGAAGAGTCTGG
CTCCATCGATCACATGCTGGGCAAGGCCGCTGACTTCTACGAGGAAGAGGTTGATGACATGGTGGCCGGCCTGTCCAGCC
TCATGGAGCCCATCATCATCGTGTTTCTCGGCACCTTGATCGGCGGCATCGTGGTCTCGATGTACCTCCCCATCTTCAAG
CTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H0HEZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.753

0.541
  pilG Neisseria gonorrhoeae MS11

52.273

97.778

0.511
  pilG Neisseria meningitidis 44/76-A

52.02

97.778

0.509
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Legionella pneumophila strain ERS1305867

48.744

98.272

0.479
  pilC Acinetobacter baumannii D1279779

48.363

98.025

0.474
  pilC Vibrio cholerae strain A1552

40.554

98.025

0.398
  pilC Vibrio campbellii strain DS40M4

39

98.765

0.385
  pilC Thermus thermophilus HB27

37.717

99.506

0.375