Detailed information NTG0478349

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H9L24_RS19955
• Genome accession: NZ_CP060790
• Coordinates: 4196937..4197815 (-)
• Length: 292 a.a.
• NCBI ID: WP_187736095.1
• Uniprot ID: -
• Organism: Paenacidovorax monticola strain KACC 19171
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4191937..4202815

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9L24_RS19925 (H9L24_19925)	argJ	4192760..4193877 (+)	1118	Protein_4019	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
H9L24_RS19930 (H9L24_19930)	-	4193922..4194794 (+)	873	WP_187736090.1	ATP-binding protein	-
H9L24_RS19935 (H9L24_19935)	-	4194787..4195224 (+)	438	WP_246483502.1	NUDIX domain-containing protein	-
H9L24_RS19940 (H9L24_19940)	-	4195271..4195480 (-)	210	WP_187736092.1	DNA gyrase inhibitor YacG	-
H9L24_RS19945 (H9L24_19945)	zapD	4195494..4196249 (-)	756	WP_187736093.1	cell division protein ZapD	-
H9L24_RS19950 (H9L24_19950)	coaE	4196326..4196934 (-)	609	WP_187736094.1	dephospho-CoA kinase	-
H9L24_RS19955 (H9L24_19955)	pilD	4196937..4197815 (-)	879	WP_187736095.1	A24 family peptidase	Machinery gene
H9L24_RS19960 (H9L24_19960)	pilC	4197815..4199032 (-)	1218	WP_187736096.1	type II secretion system F family protein	Machinery gene
H9L24_RS19965 (H9L24_19965)	pilB	4199071..4200807 (-)	1737	WP_187736097.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H9L24_RS19975 (H9L24_19975)	-	4201044..4201973 (-)	930	WP_187738411.1	polyprenyl synthetase family protein	-
H9L24_RS19980 (H9L24_19980)	rplU	4202187..4202498 (+)	312	WP_187736098.1	50S ribosomal protein L21	-
H9L24_RS19985 (H9L24_19985)	rpmA	4202511..4202768 (+)	258	WP_187736099.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 30701.36 Da
• Isoelectric Point: 7.0019

>NTDB_id=478349 H9L24_RS19955 WP_187736095.1 4196937..4197815(-) (pilD) [Paenacidovorax monticola strain KACC 19171]
MILDPVGDAVLAGVLGLLIGSFLNVVIHRLPKMLEQQWAAECAQYAATAQEVEAALAPPPGPAFSLSKPRSACPACGHMI
RWYENIPVLSYVALRGRCSACGARISARYPLVEIATGGLFAFCAWRWGITPAGAAWGLFCALLVALACIDWDTTLLPDDL
TLPLLWAGLLASALQWTGVPLFASVMGAAAGYLSLWTVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILIASV
IGALVGIALKLTSGLREGGYVPFGPFLAGAGFTALLFGPQAVMQALLGLLGL

Nucleotide

• Length: 879 bp

>NTDB_id=478349 H9L24_RS19955 WP_187736095.1 4196937..4197815(-) (pilD) [Paenacidovorax monticola strain KACC 19171]
ATGATTCTGGATCCTGTGGGGGACGCCGTTCTGGCCGGCGTCCTGGGGCTGCTCATCGGCAGTTTTCTGAATGTGGTGAT
TCACCGGCTGCCCAAGATGCTGGAACAGCAGTGGGCCGCGGAATGCGCCCAATACGCGGCGACAGCACAAGAGGTGGAGG
CCGCCTTGGCGCCCCCCCCTGGCCCAGCCTTTAGCCTGTCGAAGCCGCGCTCGGCCTGCCCCGCCTGCGGGCACATGATC
CGCTGGTACGAGAACATCCCCGTCCTGAGCTATGTGGCGCTGCGCGGGCGCTGCTCCGCCTGTGGCGCCCGCATCAGCGC
CCGCTATCCGCTGGTGGAGATCGCTACGGGCGGCCTGTTCGCGTTCTGCGCATGGCGTTGGGGCATCACCCCGGCGGGCG
CGGCCTGGGGTCTGTTCTGCGCCCTGCTCGTGGCTCTGGCCTGTATCGACTGGGATACGACCCTGCTGCCCGATGACCTG
ACTCTACCGCTGCTCTGGGCCGGCCTGCTGGCTTCGGCGCTGCAGTGGACCGGGGTGCCGCTCTTTGCCTCCGTGATGGG
CGCCGCCGCAGGGTACCTGTCGCTCTGGACCGTGTACTGGGGCTTCAAGCTGGCCACCGGCAAGGAAGGCATGGGCTATG
GCGACTTCAAGCTGTTCGCAGCCCTGGGCGCCTGGTTTGGCTGGCAGGCCCTGGTGCCCATCATCCTGATCGCCTCGGTG
ATTGGAGCCCTCGTAGGCATCGCACTCAAGCTGACCAGCGGCCTGCGCGAAGGGGGTTATGTCCCGTTCGGCCCCTTCCT
GGCCGGCGCCGGCTTCACCGCGCTGCTGTTCGGTCCCCAGGCTGTGATGCAGGCGCTCCTGGGGCTGCTGGGCCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.825	93.836	0.486
pilD	Vibrio campbellii strain DS40M4	48.772	97.603	0.476
pilD	Neisseria gonorrhoeae MS11	45.926	92.466	0.425
pilD	Acinetobacter baumannii D1279779	43.885	95.205	0.418
pilD	Acinetobacter nosocomialis M2	43.525	95.205	0.414