Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H9K76_RS04745 Genome accession   NZ_CP060714
Coordinates   1047857..1049074 (-) Length   405 a.a.
NCBI ID   WP_187598418.1    Uniprot ID   -
Organism   Diaphorobacter ruginosibacter strain DSM 27467     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042857..1054074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K76_RS04715 (H9K76_04715) - 1043864..1044739 (+) 876 WP_187598412.1 ATP-binding protein -
  H9K76_RS04720 (H9K76_04720) mutT 1044732..1045169 (+) 438 WP_187598413.1 8-oxo-dGTP diphosphatase MutT -
  H9K76_RS04725 (H9K76_04725) - 1045198..1045449 (-) 252 WP_187598414.1 DNA gyrase inhibitor YacG -
  H9K76_RS04730 (H9K76_04730) zapD 1045505..1046260 (-) 756 WP_187598415.1 cell division protein ZapD -
  H9K76_RS04735 (H9K76_04735) coaE 1046331..1046963 (-) 633 WP_187598416.1 dephospho-CoA kinase -
  H9K76_RS04740 (H9K76_04740) pilD 1046982..1047857 (-) 876 WP_187598417.1 A24 family peptidase Machinery gene
  H9K76_RS04745 (H9K76_04745) pilC 1047857..1049074 (-) 1218 WP_187598418.1 type II secretion system F family protein Machinery gene
  H9K76_RS04750 (H9K76_04750) pilB 1049100..1050836 (-) 1737 WP_187598419.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9K76_RS04755 (H9K76_04755) - 1051250..1052221 (-) 972 WP_187598420.1 tripartite tricarboxylate transporter substrate binding protein -
  H9K76_RS04760 (H9K76_04760) - 1052470..1053174 (-) 705 WP_187598421.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44443.32 Da        Isoelectric Point: 9.3984

>NTDB_id=477973 H9K76_RS04745 WP_187598418.1 1047857..1049074(-) (pilC) [Diaphorobacter ruginosibacter strain DSM 27467]
MATAASRGIKDFVFEWEGKDRAGKIVRGEIRAAGENQVKATLRRQGVLATKIKKRRMRAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRSDVETGTSLNAAFRKFPMYFDSLYCNLVEAGEAAGILETLLDRLATYMEKT
EAIKSKIRSALMYPCAVIVVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAVSEFFVAYWWLIFGVIFGGGYFFM
QAWKRSEKMQRFMDRLLLKMPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYSEATDKIQQEVSTGT
SLTNAMTNANVFPSMVIQMCAIGEESGSIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGGLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=477973 H9K76_RS04745 WP_187598418.1 1047857..1049074(-) (pilC) [Diaphorobacter ruginosibacter strain DSM 27467]
ATGGCAACCGCAGCATCGAGGGGAATCAAGGACTTCGTCTTTGAATGGGAAGGCAAGGACCGCGCAGGAAAGATCGTGCG
CGGCGAAATTCGCGCGGCTGGCGAGAACCAGGTCAAGGCCACGCTGCGCCGCCAGGGCGTGCTCGCCACCAAGATCAAGA
AGCGCCGCATGCGCGCGGGCAAGAAGATCAAGCCCAAGGACATCGCCCTCTTCACCCGCCAGATGGCCACGATGATGAAG
GCCGGCGTGCCCCTGCTCCAGGCGTTCGACATCGTGGGGCGCGGCAACACCAACCCCAGCGTCACCAAGCTGCTCAACGA
CATTCGCAGCGACGTGGAGACCGGTACGTCGCTGAACGCCGCGTTCCGCAAGTTCCCGATGTACTTCGACAGCCTCTACT
GCAACCTGGTGGAGGCCGGCGAGGCCGCCGGTATTCTCGAGACGCTGCTCGACCGCCTTGCCACCTACATGGAAAAGACG
GAAGCCATCAAGAGCAAGATCCGCTCGGCGCTCATGTATCCATGCGCCGTGATCGTGGTGGCCTTTGTCGTTGTGACGAT
CATCATGATTTTCGTGATCCCGGCGTTCAAGGAGGTGTTCACCTCGTTCGGTGCCGACCTTCCCGCGCCCACGCTCTTCG
TGATGGCTGTGAGCGAGTTCTTCGTCGCTTACTGGTGGCTGATCTTCGGCGTCATCTTCGGCGGCGGCTATTTCTTCATG
CAGGCCTGGAAGCGCAGCGAGAAGATGCAGCGCTTCATGGATCGCCTGCTCCTGAAGATGCCGATCTTCGGCGCATTGAT
CGACAAGTCCTGCGTGGCGCGCTGGACCCGCACGCTGTCCACCATGTTCGCGGCTGGCGTTCCTCTGGTCGAGGCGCTCG
ACTCCGTGGGCGGCGCCTCGGGCAACTCGGTCTACTCGGAGGCCACCGACAAGATCCAGCAGGAGGTGTCCACCGGCACC
AGCCTGACCAATGCCATGACGAACGCCAACGTGTTCCCGTCCATGGTCATCCAGATGTGCGCGATCGGCGAGGAGTCGGG
CTCGATCGACCACATGCTCGGCAAGGCAGCCGACTTCTATGAATCGGAAGTCGATGAAATGGTGGCGGGCCTCTCGAGCC
TGATGGAGCCGATCATCATCGTGTTCCTGGGCGGCCTGATCGGCGGCATCGTGGTGTCGATGTACCTGCCCATCTTCAAG
CTCGGTCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.446

99.753

0.553
  pilG Neisseria gonorrhoeae MS11

51.889

98.025

0.509
  pilG Neisseria meningitidis 44/76-A

51.637

98.025

0.506
  pilC Acinetobacter baylyi ADP1

51.005

98.272

0.501
  pilC Legionella pneumophila strain ERS1305867

50.754

98.272

0.499
  pilC Acinetobacter baumannii D1279779

49.874

98.025

0.489
  pilC Vibrio cholerae strain A1552

40.201

98.272

0.395
  pilC Thermus thermophilus HB27

37.923

100

0.388
  pilC Vibrio campbellii strain DS40M4

38.75

98.765

0.383