Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J3Q12_RS05100 Genome accession   NZ_CP071582
Coordinates   1003335..1003886 (+) Length   183 a.a.
NCBI ID   WP_002856575.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 998335..1008886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q12_RS05065 (J3Q12_05065) - 998525..998950 (+) 426 WP_002856557.1 GNAT family N-acetyltransferase -
  J3Q12_RS05070 (J3Q12_05070) - 999014..999634 (+) 621 WP_002856358.1 NAD(P)H-dependent oxidoreductase -
  J3Q12_RS05075 (J3Q12_05075) - 999634..1000239 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  J3Q12_RS05080 (J3Q12_05080) pgsA 1000364..1000900 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J3Q12_RS05085 (J3Q12_05085) rseP 1000897..1002003 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  J3Q12_RS05090 (J3Q12_05090) - 1001996..1002862 (+) 867 WP_100625521.1 VirK family antimicrobial peptide resistance protein -
  J3Q12_RS05095 (J3Q12_05095) rpsF 1002949..1003326 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  J3Q12_RS05100 (J3Q12_05100) ssb 1003335..1003886 (+) 552 WP_002856575.1 single-stranded DNA-binding protein Machinery gene
  J3Q12_RS05105 (J3Q12_05105) rpsR 1003897..1004157 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  J3Q12_RS05110 (J3Q12_05110) lon 1004218..1006593 (-) 2376 WP_002856101.1 endopeptidase La -
  J3Q12_RS05115 (J3Q12_05115) - 1006610..1007257 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  J3Q12_RS05120 (J3Q12_05120) fliW 1007418..1007807 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  J3Q12_RS05125 (J3Q12_05125) proC 1007807..1008538 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  J3Q12_RS05130 (J3Q12_05130) ctsT 1008535..1008837 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20800.68 Da        Isoelectric Point: 5.0431

>NTDB_id=477974 J3Q12_RS05100 WP_002856575.1 1003335..1003886(+) (ssb) [Campylobacter jejuni strain GB28]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=477974 J3Q12_RS05100 WP_002856575.1 1003335..1003886(+) (ssb) [Campylobacter jejuni strain GB28]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTAAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTACTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372