Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H9L41_RS02425 Genome accession   NZ_CP060704
Coordinates   574912..576135 (-) Length   407 a.a.
NCBI ID   WP_028446057.1    Uniprot ID   -
Organism   Chitinimonas koreensis strain R2A43-10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569912..581135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L41_RS02395 (H9L41_02395) - 570649..571470 (-) 822 WP_028446063.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  H9L41_RS02400 (H9L41_02400) - 571545..572300 (-) 756 WP_028446062.1 GNAT family N-acetyltransferase -
  H9L41_RS02405 (H9L41_02405) - 572401..572586 (-) 186 WP_028446061.1 DNA gyrase inhibitor YacG -
  H9L41_RS02410 (H9L41_02410) zapD 572586..573344 (-) 759 WP_028446060.1 cell division protein ZapD -
  H9L41_RS02415 (H9L41_02415) coaE 573416..574036 (-) 621 WP_028446059.1 dephospho-CoA kinase -
  H9L41_RS02420 (H9L41_02420) pilD 574039..574905 (-) 867 WP_034606803.1 A24 family peptidase Machinery gene
  H9L41_RS02425 (H9L41_02425) pilC 574912..576135 (-) 1224 WP_028446057.1 type II secretion system F family protein Machinery gene
  H9L41_RS02430 (H9L41_02430) pilB 576159..577871 (-) 1713 WP_028446056.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9L41_RS02435 (H9L41_02435) - 578057..578887 (-) 831 WP_051318970.1 inner membrane protein YpjD -
  H9L41_RS02440 (H9L41_02440) ffh 578973..580321 (+) 1349 Protein_498 signal recognition particle protein -
  H9L41_RS02445 (H9L41_02445) rpsP 580444..580686 (+) 243 WP_028446053.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44574.58 Da        Isoelectric Point: 9.9203

>NTDB_id=477848 H9L41_RS02425 WP_028446057.1 574912..576135(-) (pilC) [Chitinimonas koreensis strain R2A43-10]
MAVDKKTQLKEFNFAWEGKDRTGKTIKGEMRAPGDALVRTNLRRQGINVIKVKKQSTSRGKRITEKDITFFTRQMAVMMK
SGVPLLQAFDIVAKGHSNPSVTKLLLEIKNDVETGSSLTQAFRKHPLQFDQLFCNLVQAGEQAGILDSLLDRLATYKEKI
LAIKGKIKSALFYPAAIIVAAVIIISVIMIFVIPAFKDLFSGFGADLPGPTQLVITLSEIFVSYWWAIFGIAGGTIYGLL
ELKKRSKPFQHWIDRTALKLPLFGEIMRKATIARWTRTMSTMFAAGVPLVEALDSVGGASGNVVYVEATKKIQTEVSTGT
SLTVAMQNSEVFPSMVMQMVAIGEESGALDSMLSKIADFFEQEVDEAVDALTSLMEPMIMMVLGPIIGGIIIAMYLPIFK
MGSAIGG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=477848 H9L41_RS02425 WP_028446057.1 574912..576135(-) (pilC) [Chitinimonas koreensis strain R2A43-10]
ATGGCCGTCGACAAGAAGACACAGCTCAAGGAATTCAACTTCGCCTGGGAGGGCAAGGACCGTACGGGCAAGACCATCAA
GGGCGAGATGCGCGCGCCCGGCGATGCGCTGGTCCGCACCAACCTGCGCCGCCAGGGCATCAACGTCATCAAGGTCAAGA
AGCAGTCGACCTCGCGCGGCAAGCGCATCACCGAGAAGGACATCACCTTCTTCACGCGCCAGATGGCGGTGATGATGAAG
TCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTCGCCAAGGGCCACAGCAATCCGAGCGTGACCAAGCTGCTGCTCGA
GATCAAGAACGACGTCGAGACCGGCTCCAGCCTGACCCAGGCCTTCCGCAAGCACCCGCTGCAGTTCGACCAGCTGTTCT
GCAACCTGGTCCAGGCCGGCGAACAGGCCGGTATCCTGGACAGCCTGCTCGACCGCCTGGCCACCTACAAGGAAAAGATC
CTCGCCATCAAGGGCAAGATCAAGTCCGCACTGTTCTACCCGGCCGCCATCATCGTGGCCGCCGTGATCATCATCTCGGT
GATCATGATTTTCGTGATCCCGGCGTTCAAGGACCTGTTCTCGGGCTTCGGTGCCGACCTGCCCGGCCCGACCCAGCTGG
TCATCACGCTGTCGGAAATCTTCGTGTCCTACTGGTGGGCGATCTTCGGCATCGCGGGCGGCACCATCTACGGCCTGCTC
GAGCTCAAGAAGCGCTCCAAGCCGTTCCAGCACTGGATCGACCGCACGGCGCTCAAGCTGCCGCTGTTCGGCGAGATCAT
GCGCAAGGCGACCATCGCGCGCTGGACCCGCACCATGTCGACCATGTTTGCCGCCGGCGTCCCGCTGGTCGAGGCGCTCG
ACTCGGTCGGCGGCGCCTCGGGCAACGTCGTCTACGTCGAAGCCACCAAGAAGATCCAGACCGAGGTCAGCACCGGCACC
AGCCTCACGGTCGCGATGCAGAACAGCGAAGTATTCCCCTCGATGGTGATGCAGATGGTCGCCATCGGCGAGGAATCGGG
CGCGCTCGACTCGATGCTGAGCAAGATCGCCGACTTCTTCGAACAGGAAGTCGACGAGGCGGTCGACGCGCTGACCAGCC
TGATGGAACCGATGATCATGATGGTGCTGGGCCCGATCATCGGCGGCATCATCATCGCGATGTACCTCCCCATCTTCAAG
ATGGGCTCGGCGATCGGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

52.927

100

0.533
  pilC Pseudomonas stutzeri DSM 10701

53.75

98.28

0.528
  pilC Legionella pneumophila strain ERS1305867

53.518

97.789

0.523
  pilC Acinetobacter baylyi ADP1

51.724

99.754

0.516
  pilG Neisseria gonorrhoeae MS11

50.251

97.789

0.491
  pilG Neisseria meningitidis 44/76-A

49.749

97.789

0.486
  pilC Vibrio cholerae strain A1552

40.201

97.789

0.393
  pilC Vibrio campbellii strain DS40M4

39.259

99.509

0.391
  pilC Thermus thermophilus HB27

35.663

100

0.364