Detailed information NTG0477847

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H9L41_RS02420
• Genome accession: NZ_CP060704
• Coordinates: 574039..574905 (-)
• Length: 288 a.a.
• NCBI ID: WP_034606803.1
• Uniprot ID: -
• Organism: Chitinimonas koreensis strain R2A43-10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 569039..579905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9L41_RS02390 (H9L41_02390)	-	569895..570716 (+)	822	WP_028446064.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
H9L41_RS02395 (H9L41_02395)	-	570649..571470 (-)	822	WP_028446063.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
H9L41_RS02400 (H9L41_02400)	-	571545..572300 (-)	756	WP_028446062.1	GNAT family N-acetyltransferase	-
H9L41_RS02405 (H9L41_02405)	-	572401..572586 (-)	186	WP_028446061.1	DNA gyrase inhibitor YacG	-
H9L41_RS02410 (H9L41_02410)	zapD	572586..573344 (-)	759	WP_028446060.1	cell division protein ZapD	-
H9L41_RS02415 (H9L41_02415)	coaE	573416..574036 (-)	621	WP_028446059.1	dephospho-CoA kinase	-
H9L41_RS02420 (H9L41_02420)	pilD	574039..574905 (-)	867	WP_034606803.1	A24 family peptidase	Machinery gene
H9L41_RS02425 (H9L41_02425)	pilC	574912..576135 (-)	1224	WP_028446057.1	type II secretion system F family protein	Machinery gene
H9L41_RS02430 (H9L41_02430)	pilB	576159..577871 (-)	1713	WP_028446056.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H9L41_RS02435 (H9L41_02435)	-	578057..578887 (-)	831	WP_051318970.1	inner membrane protein YpjD	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31397.36 Da
• Isoelectric Point: 7.6133

>NTDB_id=477847 H9L41_RS02420 WP_034606803.1 574039..574905(-) (pilD) [Chitinimonas koreensis strain R2A43-10]
MAALYLLGEQPLLLVAYALLLGLIVGSFLNVVIHRLPKMMEAEFRQECALLDQPDDAEPPSRPVYNLFLPRSACPCCGQQ
IAAYDNVPVLSWLLLRGRCRHCRTPISIRYPLIELLTGLVTAGLAAQFGFSMATLGAIVFAWYLIALFWIDADTYLLPDS
LTLPLLWLGLLFNLDGTFTSLPSAVIGAVAGYLSLWSVYWIFKLVTGKEGMGHGDFKLLAAIGAWFGWQALPIVILASSV
AGALIGIGLTVLARRGWSKPLPFGPYLALAGLATMVWGPQLARLIWHG

Nucleotide

• Length: 867 bp

>NTDB_id=477847 H9L41_RS02420 WP_034606803.1 574039..574905(-) (pilD) [Chitinimonas koreensis strain R2A43-10]
ATGGCTGCGCTGTACCTGCTGGGCGAGCAGCCGCTGCTGCTCGTCGCCTACGCCTTGCTGCTCGGCCTGATCGTCGGCAG
CTTCCTCAACGTCGTCATCCACCGGCTGCCCAAGATGATGGAGGCCGAGTTCCGCCAGGAATGCGCGCTGCTCGACCAGC
CGGACGACGCCGAGCCGCCGAGCCGGCCGGTCTACAACCTGTTCCTGCCGCGCTCCGCCTGCCCTTGCTGCGGCCAGCAG
ATCGCCGCCTACGACAACGTCCCGGTGCTGTCCTGGCTGCTGCTGCGGGGGCGCTGCCGCCATTGCAGGACGCCGATCTC
GATCCGCTACCCGCTGATCGAACTGCTCACCGGCCTGGTCACGGCCGGCCTGGCCGCCCAGTTCGGCTTCAGCATGGCGA
CGCTGGGCGCGATCGTGTTCGCCTGGTACCTGATCGCGCTGTTCTGGATCGATGCCGACACCTACCTGCTGCCCGACAGC
CTGACGCTGCCGCTGCTGTGGCTCGGCCTGCTGTTCAATCTGGACGGCACCTTCACCTCGCTGCCGTCGGCGGTGATCGG
CGCCGTGGCCGGCTATCTGAGCCTGTGGAGCGTGTACTGGATCTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGTCACG
GCGACTTCAAGCTGCTCGCCGCGATCGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGATCGTCATCCTGGCTTCCTCGGTC
GCCGGCGCGCTCATCGGCATCGGCCTGACGGTGCTGGCCCGGCGCGGCTGGAGCAAGCCGTTGCCGTTCGGCCCCTACCT
GGCGCTGGCCGGCCTCGCCACCATGGTCTGGGGCCCGCAGCTGGCCCGGCTGATCTGGCACGGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	56.25	94.444	0.531
pilD	Vibrio cholerae strain A1552	55.147	94.444	0.521
pilD	Neisseria gonorrhoeae MS11	53.462	90.278	0.483
pilD	Acinetobacter baumannii D1279779	49.643	97.222	0.483
pilD	Acinetobacter nosocomialis M2	48.929	97.222	0.476