Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H7790_RS01035 Genome accession   NZ_CP060645
Coordinates   161983..162378 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain TSPY1349     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 156983..167378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7790_RS01005 (H7790_01005) - 157849..158157 (+) 309 Protein_166 hypothetical protein -
  H7790_RS01010 (H7790_01010) proC 158240..159010 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  H7790_RS01015 (H7790_01015) pepA 159058..160125 (-) 1068 WP_115230346.1 glutamyl aminopeptidase -
  H7790_RS01020 (H7790_01020) - 160590..160874 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  H7790_RS01025 (H7790_01025) - 160871..161188 (+) 318 WP_115230348.1 thioredoxin family protein -
  H7790_RS01030 (H7790_01030) ytpR 161206..161832 (+) 627 WP_011017256.1 YtpR family tRNA-binding protein -
  H7790_RS01035 (H7790_01035) ssbA 161983..162378 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  H7790_RS01040 (H7790_01040) - 162638..163279 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  H7790_RS01045 (H7790_01045) dusB 163299..164276 (-) 978 WP_115230349.1 tRNA dihydrouridine synthase DusB -
  H7790_RS01050 (H7790_01050) hslO 164263..165135 (-) 873 WP_115230350.1 Hsp33 family molecular chaperone HslO -
  H7790_RS01055 (H7790_01055) rofA 165282..166775 (-) 1494 WP_115230351.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=477291 H7790_RS01035 WP_003053955.1 161983..162378(+) (ssbA) [Streptococcus pyogenes strain TSPY1349]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=477291 H7790_RS01035 WP_003053955.1 161983..162378(+) (ssbA) [Streptococcus pyogenes strain TSPY1349]
ATGTACAATAAAGTGATAGCAATTGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397