Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   H7791_RS00725 Genome accession   NZ_CP060644
Coordinates   112266..112661 (+) Length   131 a.a.
NCBI ID   WP_136022858.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1309     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107266..117661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7791_RS00695 (H7791_00700) - 108130..108438 (+) 309 WP_136022862.1 hypothetical protein -
  H7791_RS00700 (H7791_00705) proC 108521..109291 (-) 771 WP_136022861.1 pyrroline-5-carboxylate reductase -
  H7791_RS00705 (H7791_00710) pepA 109339..110406 (-) 1068 WP_023611498.1 glutamyl aminopeptidase -
  H7791_RS00710 (H7791_00715) - 110872..111156 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  H7791_RS00715 (H7791_00720) - 111153..111470 (+) 318 WP_136022860.1 thioredoxin family protein -
  H7791_RS00720 (H7791_00725) ytpR 111488..112114 (+) 627 WP_136116869.1 YtpR family tRNA-binding protein -
  H7791_RS00725 (H7791_00730) ssbB 112266..112661 (+) 396 WP_136022858.1 single-stranded DNA-binding protein Machinery gene
  H7791_RS00730 (H7791_00735) - 112921..113562 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  H7791_RS00735 (H7791_00740) dusB 113582..114559 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  H7791_RS00740 (H7791_00745) hslO 114546..115418 (-) 873 WP_002986499.1 Hsp33 family molecular chaperone HslO -
  H7791_RS00745 (H7791_00750) rofA 115565..117058 (-) 1494 WP_136022857.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14768.91 Da        Isoelectric Point: 7.2770

>NTDB_id=477238 H7791_RS00725 WP_136022858.1 112266..112661(+) (ssbB) [Streptococcus pyogenes strain TSPY1309]
MYNKVIAIGRLVAKPELVKTATDKHVAHLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=477238 H7791_RS00725 WP_136022858.1 112266..112661(+) (ssbB) [Streptococcus pyogenes strain TSPY1309]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACATCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397