Detailed information NTG0476663

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: JZY07_RS02010
• Genome accession: NZ_CP071305
• Coordinates: 375926..378025 (+)
• Length: 699 a.a.
• NCBI ID: WP_024412401.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SC183
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 370926..383025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZY07_RS01985 (JZY07_01985)	-	371150..371590 (+)	441	WP_024400132.1	UPF0158 family protein	-
JZY07_RS01990 (JZY07_01990)	-	371651..372379 (+)	729	WP_024400131.1	MerR family transcriptional regulator	-
JZY07_RS01995 (JZY07_01995)	-	372675..373901 (+)	1227	WP_024412402.1	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	-
JZY07_RS02000 (JZY07_02000)	-	373901..375073 (+)	1173	WP_024400129.1	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	-
JZY07_RS02005 (JZY07_02005)	-	375103..375513 (+)	411	WP_024400128.1	peptide deformylase	-
JZY07_RS02010 (JZY07_02010)	clpC	375926..378025 (+)	2100	WP_024412401.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
JZY07_RS02015 (JZY07_02015)	malQ	378208..379716 (+)	1509	WP_011922661.1	4-alpha-glucanotransferase	-
JZY07_RS02020 (JZY07_02020)	glgP	379709..381973 (+)	2265	WP_024400126.1	glycogen/starch/alpha-glucan family phosphorylase	-
JZY07_RS02025 (JZY07_02025)	-	382203..382910 (-)	708	WP_004194205.1	UTRA domain-containing protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77360.21 Da
• Isoelectric Point: 4.8320

>NTDB_id=476663 JZY07_RS02010 WP_024412401.1 375926..378025(+) (clpC) [Streptococcus suis strain SC183]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAIYRQTGRLPQTEEVAHTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQEQIDNHTEQQKVVATVNDVAQAVERMTGIPVSKMGASD
IERLKELKNRLATNVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMVEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAK
EFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYMEADVVDGSIQIKEQSFA

Nucleotide

• Length: 2100 bp

>NTDB_id=476663 JZY07_RS02010 WP_024412401.1 375926..378025(+) (clpC) [Streptococcus suis strain SC183]
ATGAACAACAATTTCAATAATTTTAACAATATGGACGACATTTTCAATCAACTTATGGGCAACATGGGTGGCTATAGTAC
AGAGCGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCGGAGGAATTTGCCATTTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCACACCCAGGCTAAAGGTCAGATAAAGTCAGACGGAATTCTTGCAAAACTTGGTCGAAAT
TTGACACAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAATAAGGAAATCCAAGAAACATCTGAAATTTT
GGCACGTCGGACTAAGAATAATCCTGTTCTGGTCGGTGATGCGGGTGTTGGTAAAACTGCGGTAGTAGAAGGCTTGGCTC
AAGCTATTGTCAATGGTGACGTGCCAGCAGCCATTAAGAACAAGGAAATTATCTCCATCGACATTTCAGGCTTGGAAGCT
GGGACTCAGTACCGTGGAGCTTTTGAGGAAAATGTGCAGAATCTTGTGGATGAAGTCAAAAAAGCTGGCAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGCAGCACTGGTGGAGACTCAGGTTCCAAGGGCTTAGCAGATATTC
TCAAGCCAGCCCTGTCACGTGGGGAGTTGACCGTTATTGGTGCGACTACACAGGACGAATACCGCAATACTATTCACAAG
AATGCCGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAAGATACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AGTATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTGGTCGATGTGACCGCTGCTCACTTAGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAGGCGGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATCGACAAGCTCCAAGAACAAATTGACAACCACACGGAGCAACAGAAAG
TGGTGGCGACTGTTAACGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCTAAAATGGGAGCTTCTGAC
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAACTAACGTTATCGGTCAAGATGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGGGCAGGTTTTGATGACGGCAACCGTCCTATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATAC
TCTTACCGAGCGTGTCCGCCGCAATCCGTACTCAATCGTTCTTCTGGATGAGATTGAAAAAGCTGATCCACAAGTGATTA
CCCTTCTCTTGCAAGTGCTAGATGACGGGCATTTGACTGATGGGCAGGGCAACCAAGTTAACTTTAAAAATACCATTATT
ATCGCGACTTCTAATGCTGGTTTTGGTTATGGAATGGTAGAAGGTGAAGAAAATCAAGACATCATGGACCGTATCGCACC
ATTCTTCCGTCCGGAGTTCCTTAATCGTTTTAACGCAGTTATCGAATTCAAGCACTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCAATTAACGGTAACGGAAGCTGCCAAA
GAATTCTTGATGGAAGAAGGATATGACAAGGCCATGGGAGCCCGTCCTCTGCGCCGAGTGATTGAAAATCAGATTCGAGA
CAAGGTAACAGATTACTATTTGGATCATGTTGATGTCAAATATATGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• AAA lid domain (AAA_lid_9) (257-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.017	100	0.474
clpE	Streptococcus mutans UA159	49.922	91.702	0.458
clpE	Streptococcus pneumoniae Rx1	49.534	92.132	0.456
clpE	Streptococcus pneumoniae D39	49.534	92.132	0.456
clpE	Streptococcus pneumoniae R6	49.534	92.132	0.456
clpE	Streptococcus pneumoniae TIGR4	49.534	92.132	0.456
clpC	Bacillus subtilis subsp. subtilis str. 168	44.892	92.418	0.415
clpC	Streptococcus pneumoniae Rx1	42.066	95.565	0.402
clpC	Streptococcus pneumoniae D39	42.066	95.565	0.402
clpC	Streptococcus pneumoniae TIGR4	41.829	95.422	0.399
clpC	Streptococcus thermophilus LMG 18311	43.408	88.984	0.386
clpC	Streptococcus mutans UA159	43.528	88.412	0.385
clpC	Streptococcus thermophilus LMD-9	42.88	89.413	0.383
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.673	88.841	0.379