Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H6S61_RS06090 Genome accession   NZ_CP060047
Coordinates   1207000..1208226 (+) Length   408 a.a.
NCBI ID   WP_130247867.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202000..1213226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS06070 (H6S61_06070) ampD 1203022..1203594 (-) 573 WP_080541072.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  H6S61_RS06075 (H6S61_06075) nadC 1203687..1204574 (+) 888 WP_130354580.1 carboxylating nicotinate-nucleotide diphosphorylase -
  H6S61_RS06080 (H6S61_06080) pilA 1204797..1205264 (+) 468 WP_130270837.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H6S61_RS06085 (H6S61_06085) pilB 1205264..1206952 (+) 1689 WP_103187652.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H6S61_RS06090 (H6S61_06090) pilC 1207000..1208226 (+) 1227 WP_130247867.1 type II secretion system F family protein Machinery gene
  H6S61_RS06095 (H6S61_06095) pilD 1208319..1209188 (+) 870 WP_038941424.1 A24 family peptidase Machinery gene
  H6S61_RS06100 (H6S61_06100) coaE 1209190..1209798 (+) 609 WP_045593985.1 dephospho-CoA kinase -
  H6S61_RS06105 (H6S61_06105) zapD 1209831..1210571 (+) 741 WP_017421189.1 cell division protein ZapD -
  H6S61_RS06110 (H6S61_06110) yacG 1210634..1210828 (+) 195 WP_038941426.1 DNA gyrase inhibitor YacG -
  H6S61_RS06115 (H6S61_06115) rplS 1211060..1211413 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  H6S61_RS06120 (H6S61_06120) trmD 1211455..1212204 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H6S61_RS06125 (H6S61_06125) rimM 1212232..1212780 (-) 549 WP_038941427.1 ribosome maturation factor RimM -
  H6S61_RS06130 (H6S61_06130) rpsP 1212796..1213044 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45256.58 Da        Isoelectric Point: 10.3569

>NTDB_id=473534 H6S61_RS06090 WP_130247867.1 1207000..1208226(+) (pilC) [Vibrio vulnificus strain 2497-87]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSTIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=473534 H6S61_RS06090 WP_130247867.1 1207000..1208226(+) (pilC) [Vibrio vulnificus strain 2497-87]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTTTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTTCCTATTCTACAATCGCTCAAATTGGTTGCCGACAACCATCGCAAAGCTGAGATGAAATCAATCTT
AGCCAGTGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTCGACTTAGTCGCCACTGGGGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTACGAGCAAAAGTGATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAATTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCACCATCTATTTA
CTTCGAGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCTGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGCTTCAGTGCGGGTATACCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCAGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGAATGCCAATGTACATCGCTATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACCTGCCGATC
TTTAATTTAATGAGCGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

75.062

98.284

0.738
  pilC Pseudomonas stutzeri DSM 10701

41.337

99.02

0.409
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397