Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H2O77_RS03715 Genome accession   NZ_CP059843
Coordinates   873281..874519 (-) Length   412 a.a.
NCBI ID   WP_200019032.1    Uniprot ID   -
Organism   Cobetia sp. 4B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 868281..879519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2O77_RS03690 (H2O77_03685) argJ 869028..870251 (+) 1224 WP_215823928.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  H2O77_RS03695 (H2O77_03690) - 870359..871312 (+) 954 WP_043332483.1 Nudix family hydrolase -
  H2O77_RS03700 (H2O77_03695) yacG 871444..871689 (-) 246 WP_153635187.1 DNA gyrase inhibitor YacG -
  H2O77_RS03705 (H2O77_03700) coaE 871682..872332 (-) 651 WP_215823929.1 dephospho-CoA kinase -
  H2O77_RS03710 (H2O77_03705) pilD 872329..873189 (-) 861 WP_240548701.1 A24 family peptidase Machinery gene
  H2O77_RS03715 (H2O77_03710) pilC 873281..874519 (-) 1239 WP_200019032.1 type II secretion system F family protein Machinery gene
  H2O77_RS03720 (H2O77_03715) pilB 874695..876431 (-) 1737 WP_215823930.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H2O77_RS03725 (H2O77_03720) pilA2 877005..877445 (+) 441 WP_215823931.1 pilin Machinery gene
  H2O77_RS03730 (H2O77_03725) - 877887..879281 (+) 1395 WP_215823932.1 hypothetical protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44826.25 Da        Isoelectric Point: 9.7590

>NTDB_id=472187 H2O77_RS03715 WP_200019032.1 873281..874519(-) (pilC) [Cobetia sp. 4B]
MATPRTAKKDKKKAGIETWQWSGKNSRGENVKGELMSANVDQVKNTLVSQGIVLKRLRKKSSLFGGSKKVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDMMNQVGAGASFSEALRKHPQHFDNLFANLVEAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPIAVIGVGIGVTAILLIKVVPQFETLFQGFGAELPAFTQLTINLSEYAQNYWYVALGIVV
LTGMLIAQGMKRSEKFAYGCHRFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLVESLDTAAGASGNKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGSLDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGGLVVS
MYLPIFELGNAI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=472187 H2O77_RS03715 WP_200019032.1 873281..874519(-) (pilC) [Cobetia sp. 4B]
ATGGCAACTCCCAGAACTGCCAAGAAAGACAAGAAAAAAGCGGGCATTGAAACTTGGCAATGGTCGGGCAAGAATTCGCG
CGGTGAAAACGTCAAGGGCGAGCTGATGTCGGCCAACGTCGATCAGGTCAAGAACACGCTGGTCAGCCAGGGGATCGTGC
TCAAGCGTCTGCGCAAGAAGTCCTCCCTGTTTGGCGGCAGCAAGAAGGTCAGTGGCAAGGATGTCACCATGTTCGCCCGT
CAGATGGCGACCATGATCCGTGCTGGCGTACCGGTACTTCAGGCATTTGGCATCGTGGCTGAAAGCATGAAGAGTCCAGG
CATGCGTCATCTGGTCGAAGACATGATGAATCAGGTGGGAGCAGGCGCCAGCTTTTCGGAAGCCTTGCGCAAACACCCCC
AGCATTTTGATAACCTGTTTGCCAATCTGGTTGAAGCTGGCGAACAAGCTGGCGCCTTGGACAAGATGCTCGACCGTGTC
GCAACTTATAAAGAAAAGATTGATTCACTCAAGGCGCGCGTCAAGAAAGCCCTTTATTACCCTATCGCCGTGATCGGCGT
CGGGATCGGGGTAACAGCTATTCTGTTGATCAAGGTAGTCCCACAATTTGAAACTCTTTTTCAAGGCTTCGGCGCAGAAC
TCCCAGCATTTACTCAATTGACTATTAATCTGTCTGAGTACGCTCAAAACTACTGGTATGTAGCCCTTGGCATAGTAGTG
CTTACTGGAATGCTTATTGCTCAAGGCATGAAACGATCTGAAAAATTTGCTTATGGCTGTCACCGCTTCATGCTCAAGGT
ACCCGTGCTCGGCGATATTCTGGATAAATCGTCTGTCGCTCGTTATTCACGCACATTGGCTACGACCTTCCAAGCAGGTG
TGCCGTTAGTGGAATCACTTGATACTGCCGCCGGCGCCTCAGGCAACAAGGTCTACGAGCGCGCCATTGCCCAGATCAAG
GAAGATGTCTCTACTGGCCAGCAGCTGAACTTTGCCATGCGCAATACCCAGTTATTCCCGACACTGGCAGTACAGATGGT
GGCGATTGGCGAGGAATCCGGCTCACTGGATGCCATGCTCAACAAGGTTGCGGATTTCTACGAAGAAGATGTCGACAACA
AGGTAGATGCCCTGACCTCACTGCTGGAGCCCTTGATCATCGTGGTACTAGGCACCCTGGTGGGCGGGCTTGTAGTCTCG
ATGTATCTTCCCATCTTCGAGCTGGGCAACGCGATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.468

95.874

0.551
  pilC Acinetobacter baylyi ADP1

52.696

99.029

0.522
  pilC Acinetobacter baumannii D1279779

52.099

98.301

0.512
  pilC Legionella pneumophila strain ERS1305867

51.351

98.786

0.507
  pilC Vibrio campbellii strain DS40M4

44.724

96.602

0.432
  pilC Vibrio cholerae strain A1552

44.836

96.359

0.432
  pilG Neisseria gonorrhoeae MS11

42.579

99.757

0.425
  pilG Neisseria meningitidis 44/76-A

41.99

100

0.42