Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6K20_RS08610 Genome accession   NZ_CP070048
Coordinates   1704192..1705619 (+) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1290     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699192..1710619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K20_RS08570 (I6K20_08575) yeeW 1699376..1699570 (+) 195 WP_000988600.1 DUF5983 family protein -
  I6K20_RS08575 (I6K20_08580) - 1699616..1699696 (+) 81 Protein_1696 hypothetical protein -
  I6K20_RS25490 (I6K20_08585) - 1699985..1700158 (-) 174 WP_071592185.1 transposase domain-containing protein -
  I6K20_RS25495 (I6K20_08590) - 1700185..1700367 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6K20_RS08590 (I6K20_08595) tmaR 1700468..1700797 (-) 330 WP_000450409.1 DUF496 family protein -
  I6K20_RS08595 (I6K20_08600) yeeA 1700969..1702027 (-) 1059 WP_001200891.1 FUSC family protein -
  I6K20_RS08600 (I6K20_08605) sbmC 1702225..1702698 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  I6K20_RS08605 (I6K20_08610) dacD 1702817..1703983 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6K20_RS08610 (I6K20_08615) sbcB 1704192..1705619 (+) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  I6K20_RS08615 (I6K20_08620) tsuB 1705662..1705889 (-) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6K20_RS08620 (I6K20_08625) tsuA 1705903..1706961 (-) 1059 WP_000492312.1 thiosulfate utilization transporter TsuA/YeeE -
  I6K20_RS08625 (I6K20_08630) plaP 1707140..1708498 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6K20_RS08630 (I6K20_08635) yoeI 1708488..1708550 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6K20_RS08635 (I6K20_08640) yeeY 1708765..1709694 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6K20_RS08640 (I6K20_08645) yeeZ 1709740..1710564 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=472186 I6K20_RS08610 WP_000980610.1 1704192..1705619(+) (sbcB) [Escherichia coli strain FDAARGOS_1290]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=472186 I6K20_RS08610 WP_000980610.1 1704192..1705619(+) (sbcB) [Escherichia coli strain FDAARGOS_1290]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581