Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ToN1_RS07550 Genome accession   NZ_CP059560
Coordinates   1635780..1637012 (+) Length   410 a.a.
NCBI ID   WP_169207739.1    Uniprot ID   -
Organism   Aromatoleum petrolei strain ToN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630780..1642012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ToN1_RS07530 (ToN1_15450) - 1630933..1631703 (-) 771 WP_169207743.1 EI24 domain-containing protein -
  ToN1_RS07535 (ToN1_15460) ffh 1631716..1633074 (-) 1359 WP_169207742.1 signal recognition particle protein -
  ToN1_RS07540 (ToN1_15470) ccsA 1633117..1633944 (+) 828 WP_169207741.1 cytochrome c biogenesis protein CcsA -
  ToN1_RS07545 (ToN1_15480) pilB 1634048..1635763 (+) 1716 WP_169207740.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ToN1_RS07550 (ToN1_15490) pilC 1635780..1637012 (+) 1233 WP_169207739.1 type II secretion system F family protein Machinery gene
  ToN1_RS07555 (ToN1_15500) pilD 1637068..1637919 (+) 852 WP_169207738.1 A24 family peptidase Machinery gene
  ToN1_RS07560 (ToN1_15510) - 1638044..1638307 (+) 264 WP_169125945.1 zinc ribbon domain-containing protein -
  ToN1_RS07565 (ToN1_15520) - 1638323..1638949 (+) 627 WP_169207737.1 DUF502 domain-containing protein -
  ToN1_RS07570 (ToN1_15530) aspS 1638995..1640794 (+) 1800 WP_169207736.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44230.98 Da        Isoelectric Point: 9.7905

>NTDB_id=470618 ToN1_RS07550 WP_169207739.1 1635780..1637012(+) (pilC) [Aromatoleum petrolei strain ToN1]
MATTTRARGAAAGPKETLYTWEGKDKNGKQVRGEMRASGESVVQATLRRQGVQVLKVKKAKMSRGHKITDKDIALFTRQL
ATMMKSGVPLLQAFDIGIKGSGNPSLARLLNEVRNDVETGSSLSQAFSKHPVYFDKLFCNLVGAGEQAGILDGLLDRIAT
YKEKILAIKSKIKSAMFYPMAVIVVAAIVVTVIMLFVVPEFKKVFESFGAELPAPTMMVIGISDAFVEYWYIIFGIIAAV
ITGIGYSYKRSTAMQIALDRIILKLPVVGNIVLKATIARWTRTLSTMFAAGVPLVEALDSVGGASGNYVYQTATKQIQTE
VSTGTSLTVAMQNSNVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSTLLEPLIMVFLGTVIGGLVVAMY
LPIFKLGQVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=470618 ToN1_RS07550 WP_169207739.1 1635780..1637012(+) (pilC) [Aromatoleum petrolei strain ToN1]
ATGGCGACCACCACCCGAGCCAGGGGAGCCGCTGCCGGCCCCAAGGAAACCCTTTATACGTGGGAAGGCAAGGACAAGAA
CGGCAAACAGGTGCGCGGAGAAATGCGCGCCAGCGGCGAATCGGTCGTACAGGCCACGCTGCGCCGCCAGGGCGTGCAGG
TCCTCAAGGTCAAGAAGGCCAAGATGTCGCGTGGCCACAAGATCACCGACAAGGACATTGCGCTATTCACGCGTCAGCTG
GCGACGATGATGAAGTCCGGCGTCCCGCTGCTGCAGGCCTTCGACATCGGCATCAAGGGCTCCGGCAACCCGAGCTTGGC
GCGTCTGCTCAATGAGGTGCGCAACGACGTTGAAACCGGCTCCAGCCTCTCCCAGGCCTTCAGCAAGCACCCCGTGTATT
TCGACAAGCTGTTCTGCAATCTGGTCGGAGCCGGCGAGCAGGCAGGTATCCTCGACGGGCTACTTGACCGCATTGCGACC
TACAAGGAAAAGATTCTCGCCATCAAGAGCAAGATCAAGTCGGCGATGTTCTATCCAATGGCCGTCATCGTGGTTGCGGC
CATCGTCGTGACCGTGATCATGCTTTTCGTGGTGCCCGAGTTCAAGAAGGTGTTCGAGAGCTTCGGCGCCGAACTGCCGG
CACCGACGATGATGGTGATCGGCATTTCCGACGCCTTCGTCGAGTACTGGTACATCATATTCGGCATCATTGCGGCGGTG
ATCACCGGAATCGGCTACAGCTACAAGCGTTCGACAGCGATGCAGATTGCACTCGACCGGATAATCCTCAAGCTGCCCGT
CGTCGGCAATATCGTGCTGAAGGCGACGATCGCGCGCTGGACTCGCACTCTGTCGACGATGTTCGCAGCCGGCGTGCCGC
TTGTCGAAGCCCTCGATTCGGTCGGCGGAGCCTCGGGCAACTACGTGTACCAGACGGCGACAAAGCAGATCCAGACAGAA
GTCAGCACCGGCACCAGCCTGACGGTGGCGATGCAGAACTCCAACGTTTTCCCCAGCATGGTCGTGCAGATGGTGTCGAT
CGGCGAGGAGTCTGGCCAGCTCGACTCGATGCTCGGCAAGGTCGCCGACTTCTTCGAGCAGGAAGTTGACGATGCCGTGG
CCGGCCTGTCCACCCTGCTCGAGCCGCTCATCATGGTCTTCCTGGGTACAGTCATCGGCGGCCTTGTCGTCGCGATGTAC
CTGCCGATTTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.109

98.293

0.512
  pilC Legionella pneumophila strain ERS1305867

51.87

97.805

0.507
  pilG Neisseria gonorrhoeae MS11

50.63

96.829

0.49
  pilC Acinetobacter baumannii D1279779

50.378

96.829

0.488
  pilG Neisseria meningitidis 44/76-A

50.126

96.829

0.485
  pilC Acinetobacter baylyi ADP1

50

97.073

0.485
  pilC Vibrio cholerae strain A1552

42.677

96.585

0.412
  pilC Vibrio campbellii strain DS40M4

40.099

98.537

0.395
  pilC Thermus thermophilus HB27

38.155

97.805

0.373