Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ToN1_RS07555 Genome accession   NZ_CP059560
Coordinates   1637068..1637919 (+) Length   283 a.a.
NCBI ID   WP_169207738.1    Uniprot ID   -
Organism   Aromatoleum petrolei strain ToN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632068..1642919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ToN1_RS07540 (ToN1_15470) ccsA 1633117..1633944 (+) 828 WP_169207741.1 cytochrome c biogenesis protein CcsA -
  ToN1_RS07545 (ToN1_15480) pilB 1634048..1635763 (+) 1716 WP_169207740.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ToN1_RS07550 (ToN1_15490) pilC 1635780..1637012 (+) 1233 WP_169207739.1 type II secretion system F family protein Machinery gene
  ToN1_RS07555 (ToN1_15500) pilD 1637068..1637919 (+) 852 WP_169207738.1 A24 family peptidase Machinery gene
  ToN1_RS07560 (ToN1_15510) - 1638044..1638307 (+) 264 WP_169125945.1 zinc ribbon domain-containing protein -
  ToN1_RS07565 (ToN1_15520) - 1638323..1638949 (+) 627 WP_169207737.1 DUF502 domain-containing protein -
  ToN1_RS07570 (ToN1_15530) aspS 1638995..1640794 (+) 1800 WP_169207736.1 aspartate--tRNA ligase -
  ToN1_RS07575 (ToN1_15550) - 1640972..1642594 (+) 1623 WP_169207735.1 response regulator -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 31153.76 Da        Isoelectric Point: 7.4116

>NTDB_id=470619 ToN1_RS07555 WP_169207738.1 1637068..1637919(+) (pilD) [Aromatoleum petrolei strain ToN1]
MPDFLRDPIVFTFLATLLGLFVGSFLNVVIHRLPQMMEREWHAQAAELRNEPPPQQETFNLATPRSRCPHCGHLITALEN
IPVVSYLMLRGRCRHCSAPISRRYPVVEMLTAVLSGYTAWHFGFGLASLGALAFVWTMIALAFIDLDTQLLPDSLTLPLL
WLGLALNLDSTYADISASVIGAMAGYLALWSVYWMFKLATGKEGMGYGDFKLLAAVGAWLGWQMLPLTILFSSLVGALVG
ISLIVFARHGRNVPIPFGPYLATAGVLAMFWGQGLTSLYLGTF

Nucleotide


Download         Length: 852 bp        

>NTDB_id=470619 ToN1_RS07555 WP_169207738.1 1637068..1637919(+) (pilD) [Aromatoleum petrolei strain ToN1]
ATGCCCGACTTTCTCCGCGACCCCATCGTCTTCACCTTCCTCGCTACGCTCCTTGGCCTCTTCGTCGGCAGCTTCCTGAA
CGTCGTGATCCATCGCCTGCCACAAATGATGGAGCGCGAATGGCATGCGCAGGCGGCCGAACTGCGCAACGAACCGCCGC
CGCAGCAGGAAACCTTCAACCTCGCGACCCCCCGCTCGCGCTGCCCGCACTGCGGACACCTGATCACCGCACTGGAGAAC
ATCCCGGTCGTCAGCTACCTGATGCTAAGGGGCCGTTGCCGGCATTGCAGCGCCCCCATCAGCCGCCGCTACCCCGTGGT
GGAGATGCTGACGGCGGTCCTGTCGGGTTACACGGCCTGGCATTTCGGCTTCGGCCTCGCCAGCCTTGGCGCCCTGGCTT
TCGTCTGGACGATGATCGCGCTAGCTTTCATCGATCTCGACACCCAACTCCTGCCCGACAGTCTGACCTTGCCCCTGCTT
TGGCTGGGACTCGCACTCAACCTCGACAGCACCTACGCGGACATTTCCGCCAGCGTGATTGGTGCGATGGCCGGCTATCT
TGCGCTGTGGTCGGTGTATTGGATGTTCAAGCTCGCGACCGGCAAGGAGGGCATGGGTTATGGCGACTTCAAGTTGCTCG
CCGCCGTCGGTGCGTGGCTGGGATGGCAGATGTTGCCCCTCACGATCCTGTTCTCGTCGCTGGTGGGTGCGCTGGTCGGC
ATCAGCCTGATCGTGTTCGCGCGCCACGGTCGCAACGTCCCCATCCCTTTCGGCCCCTATCTCGCCACGGCCGGCGTGCT
GGCGATGTTCTGGGGACAGGGCCTGACGAGCTTGTACCTCGGCACCTTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.861

100

0.558
  pilD Vibrio campbellii strain DS40M4

53.31

100

0.541
  pilD Acinetobacter baumannii D1279779

47.857

98.94

0.473
  pilD Acinetobacter nosocomialis M2

47.5

98.94

0.47
  pilD Neisseria gonorrhoeae MS11

51.575

89.753

0.463