Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H2677_RS14005 Genome accession   NZ_CP059558
Coordinates   3026085..3027311 (+) Length   408 a.a.
NCBI ID   WP_125298853.1    Uniprot ID   A0AAX1MHE8
Organism   Acinetobacter junii strain YR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3021085..3032311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS13970 (H2677_13965) rimP 3021710..3022234 (-) 525 WP_004916844.1 ribosome maturation factor RimP -
  H2677_RS13990 (H2677_13985) secG 3022857..3023186 (-) 330 WP_004916847.1 preprotein translocase subunit SecG -
  H2677_RS13995 (H2677_13990) tpiA 3023199..3023990 (-) 792 WP_004958617.1 triose-phosphate isomerase -
  H2677_RS14000 (H2677_13995) pilB 3024336..3026060 (+) 1725 WP_125298852.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H2677_RS14005 (H2677_14000) pilC 3026085..3027311 (+) 1227 WP_125298853.1 type II secretion system F family protein Machinery gene
  H2677_RS14010 (H2677_14005) pilD 3027311..3028171 (+) 861 WP_212638781.1 A24 family peptidase Machinery gene
  H2677_RS14015 (H2677_14010) coaE 3028173..3028772 (+) 600 WP_212638782.1 dephospho-CoA kinase -
  H2677_RS14020 (H2677_14015) - 3028769..3029680 (-) 912 WP_212638783.1 DMT family transporter -
  H2677_RS14025 (H2677_14020) rlmB 3029711..3030460 (-) 750 WP_212638784.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H2677_RS14030 (H2677_14025) - 3030651..3030977 (-) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44916.44 Da        Isoelectric Point: 10.0488

>NTDB_id=470603 H2677_RS14005 WP_125298853.1 3026085..3027311(+) (pilC) [Acinetobacter junii strain YR7]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKNEVEGGNTFAGALKKYPQYFDTLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPITVIVVALIVTIILMVKVVPVFQNLFSSFGADLPAFTQMVVNMSNWMQKYWFILILVIGAMIA
GFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=470603 H2677_RS14005 WP_125298853.1 3026085..3027311(+) (pilC) [Acinetobacter junii strain YR7]
ATGGCAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTAGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAACATGGCTTTAGCGAAAGTCACCTTACGTAAACAAGGCGTGACAATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTGATGAAGAAAAAAGTGACGACCTTGGATATTACGGTTTTCACACGCCAATTAGCTACA
ATGATGAAAGCAGGCGTACCATTAGTGCAAGGCTTTGAAATTGTCGCTGAAGGTTTGGAAAACCCATCCATGCGTGAAGT
CGTACTAGGATTAAAAAATGAGGTTGAAGGTGGTAATACTTTTGCCGGTGCTTTAAAAAAATATCCTCAATATTTTGATA
CCTTATTTTGTTCTCTCGTCGAATCAGGAGAACAATCCGGTGCGCTTGAGACCATGTTAGATCGTGTCGCTGTATATAAG
GAAAAAAGTGAACTACTCAAACAAAAGATAAAAAAAGCAATGAAATATCCGATTACAGTAATTGTAGTTGCTTTGATTGT
TACAATTATTTTAATGGTTAAAGTCGTACCTGTCTTTCAAAATTTATTTAGCTCATTTGGCGCGGACTTACCCGCATTTA
CCCAAATGGTTGTCAATATGTCTAATTGGATGCAAAAATATTGGTTCATCCTTATTCTTGTAATTGGCGCCATGATTGCT
GGCTTTCTAGAAGCAAAAAAACGTAGTAAGAAATTTAGAGATACTTTAGATAAGCTTGCTCTAAAGTTACCAATTTTTGG
TGATCTCGTATATAAAGCGATTATTGCTCGTTACAGTCGCACACTAGCAACGACATTTGCCGCTGGCGTTCCATTAATAG
ATGCGCTTACATCTACAGCAGGTGCAACCAATAATGTTGTTTATGAGGAAGCTGTACTTAAAATTAGAGAAGATGTTGCG
ACTGGACAGCAGCTTCAATTTGCCATGCGTGTTTCAAACCGCTTCCCCGCGATGGCAATTCAAATGGTTGCCATTGGTGA
AGAGTCTGGAGCACTTGATTCAATGTTAGATAAAGTCGCAACACACTTTGAAAATGAAGTCGACAATGCAGTAGATGGTC
TGACTTCAATGATGGAACCTCTTATCATGGCAATTCTTGGTGTATTAGTTGGTGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.931

100

0.909
  pilC Acinetobacter baylyi ADP1

87.255

100

0.873
  pilC Pseudomonas stutzeri DSM 10701

60.442

99.755

0.603
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.729

97.549

0.446
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404
  pilC Thermus thermophilus HB27

36.658

98.284

0.36