Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   pbN1_RS13935 Genome accession   NZ_CP059467
Coordinates   2977532..2978767 (-) Length   411 a.a.
NCBI ID   WP_169203340.1    Uniprot ID   -
Organism   Aromatoleum bremense strain PbN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2972532..2983767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  pbN1_RS13915 (pbN1_28410) aspS 2973726..2975525 (-) 1800 WP_169204228.1 aspartate--tRNA ligase -
  pbN1_RS13920 (pbN1_28420) - 2975570..2976196 (-) 627 WP_210147510.1 DUF502 domain-containing protein -
  pbN1_RS13925 (pbN1_28430) - 2976212..2976478 (-) 267 WP_169203342.1 zinc ribbon domain-containing protein -
  pbN1_RS13930 (pbN1_28440) pilD 2976614..2977465 (-) 852 WP_169203341.1 A24 family peptidase Machinery gene
  pbN1_RS13935 (pbN1_28450) pilC 2977532..2978767 (-) 1236 WP_169203340.1 type II secretion system F family protein Machinery gene
  pbN1_RS13940 (pbN1_28460) pilB 2978784..2980502 (-) 1719 WP_169203339.1 type IV-A pilus assembly ATPase PilB Machinery gene
  pbN1_RS13945 (pbN1_28470) ccsA 2980619..2981443 (-) 825 WP_169203338.1 cytochrome c biogenesis protein CcsA -
  pbN1_RS13950 (pbN1_28480) ffh 2981486..2982844 (+) 1359 WP_169203337.1 signal recognition particle protein -
  pbN1_RS13955 (pbN1_28490) - 2982861..2983625 (+) 765 WP_169203336.1 EI24 domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44070.94 Da        Isoelectric Point: 10.1346

>NTDB_id=469767 pbN1_RS13935 WP_169203340.1 2977532..2978767(-) (pilC) [Aromatoleum bremense strain PbN1]
MATTTRAGRAAPARSRETLYSWEGKDKNGKLVRGEMRAGGPSLVQATLRRQGVLVSKVKKQKMSRGHKITDKDIALFTRQ
LATMMKSGVPLLQAFDIGIKGSGNPSLARLLNEVRTDVETGSSLSQAFSKHPLYFDKLFCNLVAAGEQAGILDGLLDRIA
TYKEKVLAIKGKIKSAMFYPIAVVVVAAIVVTVIMLFVVPEFKKVFTSFGADLPTPTLMVIGISDAFVAYWYIIFGIIAA
TVIGIGAMYKRSDAMQIAVDRAVLQLPVVGAIIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNHVYLTATRQIQT
EVSTGTSLTVAMQNASVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSTLLEPIIMVFLGVVIGGLVVAM
YLPIFKLGQVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=469767 pbN1_RS13935 WP_169203340.1 2977532..2978767(-) (pilC) [Aromatoleum bremense strain PbN1]
ATGGCGACGACAACGCGAGCCGGACGCGCGGCACCTGCGCGGTCCAGGGAAACGCTCTACAGCTGGGAAGGCAAGGACAA
GAACGGCAAGCTCGTGCGCGGGGAGATGCGCGCCGGCGGCCCGTCGCTCGTGCAGGCGACACTTCGCCGCCAGGGCGTGC
TGGTGAGCAAGGTCAAGAAGCAGAAGATGTCACGCGGTCACAAGATTACCGACAAGGACATCGCGCTCTTCACCCGGCAA
CTCGCGACGATGATGAAATCCGGCGTGCCGCTGCTGCAGGCGTTCGACATCGGCATCAAGGGTTCCGGCAATCCGAGCCT
CGCGCGACTGCTGAACGAGGTGCGCACCGACGTCGAGACCGGATCGAGCCTGTCGCAGGCATTCAGCAAGCATCCGCTCT
ATTTCGACAAGCTGTTCTGCAATCTCGTCGCCGCCGGCGAGCAGGCGGGGATTCTCGACGGCCTGCTGGACCGCATCGCG
ACCTACAAGGAAAAGGTTCTCGCGATCAAGGGCAAGATCAAGTCGGCGATGTTCTACCCGATCGCGGTCGTCGTCGTCGC
GGCGATCGTCGTCACCGTGATCATGCTGTTCGTCGTGCCCGAATTCAAGAAGGTGTTCACCAGCTTCGGGGCGGATCTTC
CCACACCGACGCTGATGGTCATCGGCATATCGGACGCCTTCGTCGCGTACTGGTACATCATCTTCGGCATTATCGCGGCG
ACGGTGATCGGCATCGGTGCGATGTACAAACGCTCGGACGCGATGCAGATCGCCGTCGACCGCGCGGTGCTGCAGCTGCC
GGTCGTCGGCGCCATCATCCGCAAGGCCACGATCGCGCGCTGGACGCGCACCCTGGCGACGATGTTCGCCGCCGGCGTGC
CGCTCGTCGAAGCGCTCGATTCGGTCGGCGGCGCGTCGGGCAACCACGTCTACCTGACGGCGACGCGCCAGATCCAGACC
GAGGTCAGCACCGGCACCAGCCTCACGGTCGCGATGCAGAACGCGAGCGTGTTCCCGAGCATGGTCGTGCAGATGGTGTC
GATCGGCGAGGAATCCGGACAGCTCGACTCGATGCTCGGCAAGGTCGCGGACTTCTTCGAACAGGAGGTCGACGACGCCG
TCGCCGGGCTGTCCACGCTGCTCGAGCCGATCATCATGGTGTTTCTCGGCGTGGTCATCGGTGGTCTCGTCGTCGCGATG
TACCTGCCGATCTTCAAGCTTGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.88

97.08

0.504
  pilC Legionella pneumophila strain ERS1305867

52.01

96.837

0.504
  pilG Neisseria gonorrhoeae MS11

50.126

96.594

0.484
  pilG Neisseria meningitidis 44/76-A

49.37

96.594

0.477
  pilC Acinetobacter baylyi ADP1

48.492

96.837

0.47
  pilC Acinetobacter baumannii D1279779

48.111

96.594

0.465
  pilC Vibrio cholerae strain A1552

41.667

96.35

0.401
  pilC Vibrio campbellii strain DS40M4

41.058

96.594

0.397
  pilC Thermus thermophilus HB27

39.401

97.567

0.384