Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   pbN1_RS13930 Genome accession   NZ_CP059467
Coordinates   2976614..2977465 (-) Length   283 a.a.
NCBI ID   WP_169203341.1    Uniprot ID   -
Organism   Aromatoleum bremense strain PbN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2971614..2982465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  pbN1_RS13910 (pbN1_28400) - 2971933..2973555 (-) 1623 WP_169204227.1 tetratricopeptide repeat-containing response regulator -
  pbN1_RS13915 (pbN1_28410) aspS 2973726..2975525 (-) 1800 WP_169204228.1 aspartate--tRNA ligase -
  pbN1_RS13920 (pbN1_28420) - 2975570..2976196 (-) 627 WP_210147510.1 DUF502 domain-containing protein -
  pbN1_RS13925 (pbN1_28430) - 2976212..2976478 (-) 267 WP_169203342.1 zinc ribbon domain-containing protein -
  pbN1_RS13930 (pbN1_28440) pilD 2976614..2977465 (-) 852 WP_169203341.1 A24 family peptidase Machinery gene
  pbN1_RS13935 (pbN1_28450) pilC 2977532..2978767 (-) 1236 WP_169203340.1 type II secretion system F family protein Machinery gene
  pbN1_RS13940 (pbN1_28460) pilB 2978784..2980502 (-) 1719 WP_169203339.1 type IV-A pilus assembly ATPase PilB Machinery gene
  pbN1_RS13945 (pbN1_28470) ccsA 2980619..2981443 (-) 825 WP_169203338.1 cytochrome c biogenesis protein CcsA -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 31047.70 Da        Isoelectric Point: 6.8996

>NTDB_id=469766 pbN1_RS13930 WP_169203341.1 2976614..2977465(-) (pilD) [Aromatoleum bremense strain PbN1]
MPDLFHDPLLFTALATLVGLFVGSFLNVVIHRLPRMMEREWHAQAAELRGESLPEQETYNLAVPRSRCPHCGHLITPFEN
IPVVSYLVLRGRCRHCSAPIGRRYPVVELLTAILSGYAAWHFGFGLAAAGAMLFLWAMLALAFIDLDTQLLPDNLTLPLL
WLGLLFNLDGTYSELPEAVVGAIAGYLALWAVYWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILFSSLVGAVTG
LGLIVFARHGRDVPIPFGPYLAAAGVLALFWGKPLTQLYLGSL

Nucleotide


Download         Length: 852 bp        

>NTDB_id=469766 pbN1_RS13930 WP_169203341.1 2976614..2977465(-) (pilD) [Aromatoleum bremense strain PbN1]
ATGCCCGATCTCTTTCACGACCCCCTCTTGTTCACCGCGCTCGCGACGCTCGTCGGCCTTTTCGTCGGCAGCTTCCTGAA
CGTCGTCATCCACCGGTTGCCGCGCATGATGGAGCGCGAATGGCACGCCCAAGCCGCCGAATTGCGCGGCGAATCGCTCC
CCGAACAGGAAACCTACAATCTCGCGGTGCCGCGCTCGCGCTGCCCGCACTGCGGCCACCTGATCACCCCCTTCGAGAAC
ATCCCGGTCGTCAGCTATCTCGTCCTGCGCGGGCGATGCCGCCACTGCAGCGCTCCCATCGGCCGCCGCTATCCGGTCGT
CGAACTGCTCACCGCGATACTGTCCGGCTACGCCGCGTGGCACTTCGGCTTCGGCCTCGCGGCCGCCGGCGCAATGCTTT
TCCTGTGGGCGATGCTCGCGCTCGCCTTCATCGATCTCGACACCCAGCTGCTGCCCGACAATCTTACCCTCCCGCTGCTG
TGGCTCGGCCTGCTCTTCAATCTCGACGGCACGTACAGCGAACTCCCGGAGGCCGTCGTCGGCGCGATCGCCGGTTACCT
CGCGCTGTGGGCGGTGTACTGGCTGTTCAAACTCGCCACGGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGCTCG
CCGCGATCGGGGCGTGGCTCGGATGGCAGATGCTGCCGTTGACGATCCTGTTCTCGTCGCTCGTCGGCGCGGTCACCGGC
CTCGGCCTGATCGTTTTCGCCCGGCACGGCCGGGACGTGCCGATTCCGTTCGGCCCCTATCTCGCCGCTGCCGGCGTGCT
GGCGCTGTTCTGGGGCAAGCCGCTCACGCAGTTGTACCTCGGCAGCCTGTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(132-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.386

100

0.548
  pilD Vibrio campbellii strain DS40M4

54.093

99.293

0.537
  pilD Acinetobacter nosocomialis M2

48.905

96.82

0.473
  pilD Acinetobacter baumannii D1279779

48.905

96.82

0.473
  pilD Neisseria gonorrhoeae MS11

49.606

89.753

0.445