Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HZF06_RS19295 Genome accession   NZ_CP059378
Coordinates   3876709..3877128 (-) Length   139 a.a.
NCBI ID   WP_181601414.1    Uniprot ID   A0A7D7A2B6
Organism   Clostridium intestinale strain Lx1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3842965..3901566 3876709..3877128 within 0


Gene organization within MGE regions


Location: 3842965..3901566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZF06_RS19110 (HZF06_19110) secA 3844148..3846664 (-) 2517 WP_181601384.1 preprotein translocase subunit SecA -
  HZF06_RS19115 (HZF06_19115) - 3846821..3847669 (-) 849 WP_181601385.1 DegV family protein -
  HZF06_RS19120 (HZF06_19120) raiA 3847795..3848337 (-) 543 WP_021800499.1 ribosome-associated translation inhibitor RaiA -
  HZF06_RS19125 (HZF06_19125) - 3848903..3849493 (-) 591 WP_181601386.1 SHOCT domain-containing protein -
  HZF06_RS19130 (HZF06_19130) - 3849596..3850216 (-) 621 WP_181601387.1 hypothetical protein -
  HZF06_RS19135 (HZF06_19135) - 3850206..3850703 (-) 498 WP_207722158.1 type II toxin-antitoxin system antitoxin SocA domain-containing protein -
  HZF06_RS24210 - 3851100..3851708 (-) 609 WP_243186687.1 SEC-C metal-binding domain-containing protein -
  HZF06_RS19145 (HZF06_19145) - 3851835..3852623 (-) 789 WP_181601388.1 peptidoglycan-binding domain-containing protein -
  HZF06_RS19150 (HZF06_19150) - 3852681..3853013 (-) 333 WP_181601389.1 hypothetical protein -
  HZF06_RS19155 (HZF06_19155) - 3853031..3853234 (-) 204 WP_181601390.1 BhlA/UviB family holin-like peptide -
  HZF06_RS19160 (HZF06_19160) - 3853294..3853548 (-) 255 WP_243186778.1 hypothetical protein -
  HZF06_RS19165 (HZF06_19165) - 3854016..3854306 (-) 291 WP_181601392.1 hypothetical protein -
  HZF06_RS19170 (HZF06_19170) - 3854320..3858315 (-) 3996 WP_181601393.1 hypothetical protein -
  HZF06_RS19175 (HZF06_19175) - 3858335..3858541 (-) 207 WP_181601394.1 hypothetical protein -
  HZF06_RS19180 (HZF06_19180) - 3858557..3858907 (-) 351 WP_181601395.1 DUF6711 family protein -
  HZF06_RS19185 (HZF06_19185) - 3858919..3861435 (-) 2517 WP_181601396.1 hypothetical protein -
  HZF06_RS19190 (HZF06_19190) - 3861488..3861793 (-) 306 WP_084765043.1 Gp15 family bacteriophage protein -
  HZF06_RS19195 (HZF06_19195) - 3861807..3862172 (-) 366 WP_021801069.1 hypothetical protein -
  HZF06_RS19200 (HZF06_19200) - 3862187..3862936 (-) 750 WP_181601397.1 Ig-like domain-containing protein -
  HZF06_RS19205 (HZF06_19205) - 3862947..3863333 (-) 387 WP_181601398.1 minor capsid protein -
  HZF06_RS19210 (HZF06_19210) - 3863333..3863716 (-) 384 WP_181601399.1 hypothetical protein -
  HZF06_RS19215 (HZF06_19215) - 3863713..3864039 (-) 327 WP_181601400.1 hypothetical protein -
  HZF06_RS19220 (HZF06_19220) - 3864042..3864392 (-) 351 WP_181601401.1 hypothetical protein -
  HZF06_RS19225 (HZF06_19225) - 3864427..3864660 (-) 234 WP_181601402.1 hypothetical protein -
  HZF06_RS19230 (HZF06_19230) - 3864673..3865557 (-) 885 WP_181601403.1 capsid protein -
  HZF06_RS19235 (HZF06_19235) - 3865581..3866174 (-) 594 WP_181601404.1 hypothetical protein -
  HZF06_RS19240 (HZF06_19240) - 3866332..3866655 (+) 324 WP_181601405.1 hypothetical protein -
  HZF06_RS19245 (HZF06_19245) - 3866717..3866884 (-) 168 WP_181601406.1 CPCC family cysteine-rich protein -
  HZF06_RS24215 (HZF06_19250) - 3866889..3868532 (-) 1644 WP_181601407.1 phage minor capsid protein -
  HZF06_RS19255 (HZF06_19255) - 3868516..3870036 (-) 1521 WP_243186688.1 phage portal protein -
  HZF06_RS19260 (HZF06_19260) - 3870040..3871389 (-) 1350 WP_181601408.1 terminase -
  HZF06_RS19265 (HZF06_19265) - 3871382..3871903 (-) 522 WP_181601409.1 terminase small subunit -
  HZF06_RS19270 (HZF06_19270) - 3871957..3872472 (-) 516 WP_181601410.1 hypothetical protein -
  HZF06_RS19275 (HZF06_19275) - 3872720..3873280 (-) 561 WP_181601411.1 hypothetical protein -
  HZF06_RS19280 (HZF06_19280) - 3873298..3873453 (-) 156 WP_181601412.1 hypothetical protein -
  HZF06_RS19285 (HZF06_19285) - 3873780..3876086 (-) 2307 WP_181601413.1 phage/plasmid primase, P4 family -
  HZF06_RS19290 (HZF06_19290) - 3876106..3876690 (-) 585 WP_181603776.1 ERCC4 domain-containing protein -
  HZF06_RS19295 (HZF06_19295) ssbA 3876709..3877128 (-) 420 WP_181601414.1 single-stranded DNA-binding protein Machinery gene
  HZF06_RS19300 (HZF06_19300) - 3877218..3878096 (-) 879 WP_181601415.1 DUF3102 domain-containing protein -
  HZF06_RS19305 (HZF06_19305) - 3878108..3879652 (-) 1545 WP_181601416.1 PcfJ domain-containing protein -
  HZF06_RS19310 (HZF06_19310) - 3879663..3880076 (-) 414 WP_181601417.1 hypothetical protein -
  HZF06_RS19315 (HZF06_19315) - 3880119..3883910 (-) 3792 WP_181601418.1 metallophosphoesterase -
  HZF06_RS19320 (HZF06_19320) - 3883907..3884053 (-) 147 WP_181601419.1 aspartyl-phosphate phosphatase Spo0E family protein -
  HZF06_RS19325 (HZF06_19325) - 3884050..3884235 (-) 186 WP_181601420.1 hypothetical protein -
  HZF06_RS19330 (HZF06_19330) - 3884235..3885242 (-) 1008 WP_181601421.1 hypothetical protein -
  HZF06_RS19335 (HZF06_19335) - 3885272..3885457 (-) 186 WP_181601422.1 hypothetical protein -
  HZF06_RS19340 (HZF06_19340) - 3885429..3885590 (-) 162 WP_181601423.1 hypothetical protein -
  HZF06_RS19345 (HZF06_19345) - 3885636..3885866 (-) 231 WP_181601424.1 helix-turn-helix domain-containing protein -
  HZF06_RS19350 (HZF06_19350) - 3885885..3886115 (-) 231 WP_181601425.1 helix-turn-helix transcriptional regulator -
  HZF06_RS19355 (HZF06_19355) - 3886349..3886777 (+) 429 WP_181601426.1 helix-turn-helix transcriptional regulator -
  HZF06_RS19360 (HZF06_19360) - 3886791..3887225 (+) 435 WP_181601427.1 ImmA/IrrE family metallo-endopeptidase -
  HZF06_RS19365 (HZF06_19365) - 3887295..3887489 (+) 195 WP_181601428.1 hypothetical protein -
  HZF06_RS19370 (HZF06_19370) - 3887523..3888722 (+) 1200 WP_181601429.1 site-specific integrase -
  HZF06_RS19375 (HZF06_19375) - 3889047..3889724 (-) 678 WP_181601430.1 ComF family protein -
  HZF06_RS19380 (HZF06_19380) - 3889697..3890713 (-) 1017 WP_181601431.1 hypothetical protein -
  HZF06_RS19385 (HZF06_19385) - 3890729..3892957 (-) 2229 WP_021800496.1 ATP-dependent RecD-like DNA helicase -
  HZF06_RS19390 (HZF06_19390) nagA 3893100..3894242 (+) 1143 WP_181601432.1 N-acetylglucosamine-6-phosphate deacetylase -
  HZF06_RS19395 (HZF06_19395) metK 3894304..3895479 (-) 1176 WP_181601433.1 methionine adenosyltransferase -
  HZF06_RS19440 (HZF06_19440) - 3896748..3897362 (-) 615 WP_181601434.1 hypothetical protein -
  HZF06_RS19445 (HZF06_19445) yyaC 3897515..3898054 (+) 540 WP_073022500.1 spore protease YyaC -
  HZF06_RS19450 (HZF06_19450) mreB 3898113..3899135 (-) 1023 WP_021800491.1 rod shape-determining protein MreB -
  HZF06_RS19455 (HZF06_19455) spoIIID 3899228..3899479 (-) 252 WP_021800490.1 sporulation transcriptional regulator SpoIIID -
  HZF06_RS19460 (HZF06_19460) - 3899580..3900347 (-) 768 WP_021800489.1 M23 family metallopeptidase -
  HZF06_RS19465 (HZF06_19465) spoIID 3900514..3901566 (-) 1053 WP_181601435.1 stage II sporulation protein D -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14995.73 Da        Isoelectric Point: 4.8779

>NTDB_id=469166 HZF06_RS19295 WP_181601414.1 3876709..3877128(-) (ssbA) [Clostridium intestinale strain Lx1]
MNKVVLIGRLTRDPELKFTPGNGTAVTSITLAVDKYNSATKQREADFISVTIWGKQAEATANYMTKGSLMAISGRIQTRT
YDDKEGNKRYVTEVVANETSFLSSKGNGAPGGANQTGNSISSWPEDDMVPVVDDGDIPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=469166 HZF06_RS19295 WP_181601414.1 3876709..3877128(-) (ssbA) [Clostridium intestinale strain Lx1]
ATGAATAAGGTAGTGCTTATAGGTAGATTAACGCGAGATCCAGAGCTTAAATTTACACCGGGAAATGGTACCGCAGTAAC
TAGCATAACTCTAGCAGTTGACAAATATAATTCTGCTACCAAGCAAAGAGAAGCTGATTTTATATCAGTTACTATATGGG
GTAAACAAGCCGAAGCTACAGCCAACTATATGACTAAGGGTAGCCTTATGGCTATAAGCGGAAGGATTCAGACAAGGACT
TATGATGATAAAGAAGGAAACAAGAGGTATGTAACAGAGGTTGTTGCTAATGAGACAAGCTTCTTGTCTAGCAAAGGCAA
TGGAGCTCCTGGAGGAGCGAATCAAACAGGTAACAGTATATCATCATGGCCAGAGGATGATATGGTGCCAGTTGTTGATG
ATGGCGACATACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7A2B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

39.535

100

0.489
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.538

93.525

0.388
  ssbB/cilA Streptococcus mitis NCTC 12261

38.129

100

0.381
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.129

100

0.381
  ssbB Bacillus subtilis subsp. subtilis str. 168

49.057

76.259

0.374
  ssbA Streptococcus mutans UA159

37.143

100

0.374
  ssbB/cilA Streptococcus pneumoniae D39

37.41

100

0.374
  ssbB/cilA Streptococcus pneumoniae R6

37.41

100

0.374
  ssbB/cilA Streptococcus pneumoniae Rx1

37.41

100

0.374
  ssbB/cilA Streptococcus mitis SK321

37.41

100

0.374
  ssb Latilactobacillus sakei subsp. sakei 23K

48.113

76.259

0.367