Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H0S58_RS01335 Genome accession   NZ_CP059079
Coordinates   288018..290147 (+) Length   709 a.a.
NCBI ID   WP_195727540.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 283018..295147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS01315 (H0S58_01315) pilM 285002..286063 (+) 1062 WP_195726929.1 pilus assembly protein PilM Machinery gene
  H0S58_RS01320 (H0S58_01320) pilN 286063..286692 (+) 630 WP_053579418.1 PilN domain-containing protein Machinery gene
  H0S58_RS01325 (H0S58_01325) comO 286689..287429 (+) 741 WP_195726930.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S58_RS01330 (H0S58_01330) pilP 287429..287956 (+) 528 WP_195726931.1 pilus assembly protein PilP Machinery gene
  H0S58_RS01335 (H0S58_01335) pilQ 288018..290147 (+) 2130 WP_195727540.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S58_RS01340 (H0S58_01340) aroK 290184..290732 (+) 549 WP_195726932.1 shikimate kinase AroK -
  H0S58_RS01345 (H0S58_01345) aroB 290750..291835 (+) 1086 WP_193890797.1 3-dehydroquinate synthase -
  H0S58_RS01350 (H0S58_01350) - 291839..292708 (+) 870 WP_195726933.1 hypothetical protein -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 76809.88 Da        Isoelectric Point: 5.0544

>NTDB_id=467033 H0S58_RS01335 WP_195727540.1 288018..290147(+) (pilQ) [Acinetobacter sp. TTH0-4 strain 1BD1]
MNHLFRQFSMGAVAIAVMQVANAQVSITNIVPMQVAGQGTEIRVMFNGIPPQPQAYQLEQPSRLILDFDKAQQNLKQSTI
AVATKEANSVDVSSDAQRSRLTVNLADAGAFTTRMEGNTFILKINTVENNNFSTQQAVAQNPTQGISNIGFQRGSQGEGQ
VVIDLLGSNTPVDVQQQGSKVVIRTLGNKVPTHLARRLNVNDFATPVSVVDAKNDGGNGVITIQTEGSYEYMAYQTDNKL
TISLKRPEDKDPFKPKAANSYTGKKISLDFQDIEVRRVLQLLADFTEINMVTADTVQGNITLRLKDVPWDQALDIILKTK
NLDKRRNGNVIWIAPVTELIKSEEEEAKAIAQSVKLAPLQTEYIQLSYAKAVDIEKLITQGKNSSNGSNRSSGSGADSLG
DSVGGLLSPRGTISTDPRTNTIIVNDTSVKIDQIRKMIDLLDVSVKQVMVEARIVRASTEFSKQMGVKWGILSQGINQNS
DLLVGGSDTTLWDLKTPDDDGKYTIQRPDNLNVDLGVTAPGASKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLT
ADKQAAKVASGTQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKIQMMLQIKNDSVGNPTPTGQLTINKNEINT
NVLVDNGETVVLGGIFEQTTANQQTKVPFLGDLPYIGRLFRKDVKSDNKSELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=467033 H0S58_RS01335 WP_195727540.1 288018..290147(+) (pilQ) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGAACCATTTGTTCCGTCAATTTTCTATGGGTGCTGTTGCAATTGCAGTCATGCAGGTTGCCAATGCTCAAGTTAGTAT
TACCAATATTGTTCCTATGCAAGTGGCAGGGCAAGGTACAGAAATACGTGTTATGTTCAATGGTATACCACCGCAGCCAC
AAGCCTATCAGCTTGAACAACCTTCACGTTTAATATTGGATTTTGATAAAGCACAGCAAAATTTAAAACAAAGTACGATT
GCTGTGGCGACGAAAGAAGCCAATTCTGTTGATGTGAGTTCTGATGCGCAGCGTTCACGTTTAACAGTTAATTTAGCTGA
TGCGGGTGCATTTACCACGCGTATGGAAGGCAATACTTTTATTTTAAAAATTAATACAGTTGAGAATAATAATTTTAGTA
CTCAACAGGCGGTTGCTCAGAATCCAACACAAGGCATTTCAAATATTGGCTTTCAGCGTGGCAGTCAAGGTGAAGGTCAA
GTCGTGATTGATTTGCTGGGCAGCAATACGCCTGTCGATGTGCAACAACAAGGCAGTAAAGTAGTAATACGCACATTAGG
AAATAAAGTGCCGACACATTTGGCACGTCGTTTAAATGTGAATGATTTTGCCACGCCGGTTTCAGTTGTAGATGCAAAGA
ATGACGGTGGTAATGGTGTTATAACAATTCAAACTGAGGGTAGCTATGAATATATGGCCTATCAAACGGATAATAAACTC
ACCATTAGTTTGAAGCGTCCAGAAGATAAAGACCCCTTCAAACCTAAAGCTGCGAACAGTTATACAGGTAAAAAGATTTC
TTTAGATTTTCAAGATATTGAAGTACGTCGTGTACTACAATTATTGGCGGATTTTACTGAAATCAATATGGTGACTGCTG
ATACAGTACAAGGCAATATTACCCTACGTTTAAAGGATGTTCCTTGGGATCAAGCCTTAGATATCATTTTAAAAACCAAG
AACTTGGATAAACGTCGTAATGGAAATGTGATTTGGATTGCCCCTGTCACAGAATTGATTAAATCGGAAGAAGAAGAAGC
AAAAGCGATTGCGCAAAGCGTTAAACTTGCGCCATTACAAACAGAATATATTCAACTCAGTTATGCTAAAGCGGTTGATA
TTGAGAAACTCATTACTCAAGGTAAAAACTCTTCAAATGGATCGAATCGCTCTAGTGGTTCTGGAGCAGACTCTCTGGGG
GATAGTGTAGGAGGTTTACTCAGTCCACGAGGGACAATTTCAACTGATCCGCGGACCAATACGATTATTGTAAATGATAC
TTCGGTAAAAATTGATCAAATCCGTAAAATGATTGACTTGTTGGATGTGTCAGTAAAACAAGTGATGGTTGAGGCACGTA
TTGTGCGTGCTTCTACTGAGTTTAGTAAGCAGATGGGGGTGAAGTGGGGAATTTTATCCCAAGGTATTAACCAAAATAGT
GACTTATTAGTGGGTGGTAGTGATACGACTTTATGGGATTTAAAAACACCAGATGATGATGGTAAATATACCATTCAACG
TCCAGATAATTTAAATGTCGATTTAGGTGTAACAGCACCTGGTGCCAGTAAGATTGCCTTTGGTCTCATTAGTTTATCTG
ACTTTATGTTGGATTTGGAGCTTTCAGCACTACAAGCTGATGGTTATGGAGAAGTCATTTCAACGCCAAAAGTGCTGACT
GCGGATAAACAAGCTGCCAAAGTTGCTTCAGGTACACAGATTCCTTATCAATCTGCCGAAGGTGGTGGTGCAAATGCAGT
GTCTACCACAGAATTTATTGATGCAACCTTAAGTCTGGATGTCACCCCAAGTATTACCCCAGATGGCAAAATTCAAATGA
TGTTGCAAATCAAAAATGACTCCGTGGGCAATCCGACTCCTACAGGTCAATTAACGATTAATAAAAATGAAATTAACACC
AATGTTCTGGTTGATAATGGTGAGACTGTAGTCTTGGGCGGTATTTTTGAGCAAACCACTGCCAACCAACAAACCAAAGT
CCCGTTTTTGGGAGATTTACCTTATATTGGGCGTTTATTCCGTAAAGATGTAAAATCTGATAATAAGAGTGAGCTCTTGA
TTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-111)

Secretin and TonB N terminus short domain (STN)

(292-335)

Bacterial type II and III secretion system protein (Secretin)

(543-701)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.105

100

0.777
  pilQ Acinetobacter baumannii strain A118

75.967

100

0.776
  comQ Acinetobacter baylyi ADP1

74.194

100

0.746
  pilQ Pseudomonas aeruginosa PAK

40.368

99.577

0.402
  pilQ Legionella pneumophila strain Lp02

38.301

94.64

0.362
  pilQ Legionella pneumophila strain ERS1305867

38.301

94.64

0.362