Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I6J86_RS18550 Genome accession   NZ_CP069451
Coordinates   3901886..3902401 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain FDAARGOS_1256     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3896886..3907401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J86_RS18525 (I6J86_18525) ygaZ 3897285..3898022 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  I6J86_RS18530 (I6J86_18530) ygaH 3898012..3898347 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  I6J86_RS18535 (I6J86_18535) emrR 3898438..3898968 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  I6J86_RS18540 (I6J86_18540) emrA 3899095..3900267 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  I6J86_RS18545 (I6J86_18545) emrB 3900284..3901822 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  I6J86_RS18550 (I6J86_18550) luxS 3901886..3902401 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  I6J86_RS18555 (I6J86_18555) gshA 3902551..3904107 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  I6J86_RS18560 (I6J86_18560) yqaA 3904180..3904608 (-) 429 WP_001287454.1 YqaA family protein -
  I6J86_RS18565 (I6J86_18565) yqaB 3904605..3905171 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I6J86_RS18595 (I6J86_18595) csrA 3906226..3906411 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=467029 I6J86_RS18550 WP_001130208.1 3901886..3902401(-) (luxS) [Escherichia coli strain FDAARGOS_1256]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=467029 I6J86_RS18550 WP_001130208.1 3901886..3902401(-) (luxS) [Escherichia coli strain FDAARGOS_1256]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737