Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   H0S58_RS01325 Genome accession   NZ_CP059079
Coordinates   286689..287429 (+) Length   246 a.a.
NCBI ID   WP_195726930.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281689..292429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS01310 (H0S58_01310) ponA 282308..284836 (-) 2529 WP_195726928.1 penicillin-binding protein PBP1a -
  H0S58_RS01315 (H0S58_01315) pilM 285002..286063 (+) 1062 WP_195726929.1 pilus assembly protein PilM Machinery gene
  H0S58_RS01320 (H0S58_01320) pilN 286063..286692 (+) 630 WP_053579418.1 PilN domain-containing protein Machinery gene
  H0S58_RS01325 (H0S58_01325) comO 286689..287429 (+) 741 WP_195726930.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S58_RS01330 (H0S58_01330) pilP 287429..287956 (+) 528 WP_195726931.1 pilus assembly protein PilP Machinery gene
  H0S58_RS01335 (H0S58_01335) pilQ 288018..290147 (+) 2130 WP_195727540.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S58_RS01340 (H0S58_01340) aroK 290184..290732 (+) 549 WP_195726932.1 shikimate kinase AroK -
  H0S58_RS01345 (H0S58_01345) aroB 290750..291835 (+) 1086 WP_193890797.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27799.53 Da        Isoelectric Point: 4.6658

>NTDB_id=467031 H0S58_RS01325 WP_195726930.1 286689..287429(+) (comO) [Acinetobacter sp. TTH0-4 strain 1BD1]
MSLDEFDELNSQENVSPKKKMTLDKFFQQFNTLDMNNYGSWPLSVKITCWILIILMIALLGYFLAIKSKLENISNAQAQE
QNLLNEFREKDSKLRNLQQLQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGIAALPRIVTLHDFDISAIENKEKKTDIPQVTYNVKAKTYRYIGITEAVTNQPSVNTAANSAA
QAGGTQ

Nucleotide


Download         Length: 741 bp        

>NTDB_id=467031 H0S58_RS01325 WP_195726930.1 286689..287429(+) (comO) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGAGTCTCGATGAATTTGATGAATTAAATTCCCAAGAAAATGTAAGTCCCAAGAAAAAGATGACACTGGATAAATTTTT
TCAGCAGTTTAATACTTTGGACATGAATAACTATGGCAGTTGGCCGTTATCCGTTAAAATTACCTGTTGGATTTTGATTA
TTTTAATGATTGCTTTGCTGGGGTATTTCTTGGCGATTAAAAGCAAATTAGAAAATATTTCTAATGCACAGGCGCAAGAA
CAAAATTTACTGAATGAATTTCGTGAAAAAGATTCAAAACTGCGTAATTTGCAGCAGTTGCAAGCTCAATTACAAGAAAT
GGAAGCAAATTTTAATCAACAATTAGAGCAGTTGCCTAAAGAAACTGAAATTCCTGGCTTAGTTGAGGACATCAACGTCA
GTGGCGTAAATTCAGGTTTAAAATTTAAGAATATTCGTTTGGAAAATGAAATTAAACAAGAGTTTTTCATTGAGCAACCG
ATTTCTATTGAGGCAACAGGCGACTATCATGCTTTTGGTTCATTTGTGAGTGGTATTGCTGCACTGCCGCGTATTGTGAC
TTTGCATGATTTTGATATTTCAGCAATAGAAAATAAAGAGAAAAAAACAGACATTCCTCAAGTGACTTATAACGTTAAAG
CAAAAACATATCGTTATATTGGTATAACAGAGGCTGTAACTAATCAACCATCAGTAAATACTGCTGCTAACTCAGCTGCT
CAAGCTGGAGGGACACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

70.204

99.593

0.699
  pilO Acinetobacter baumannii D1279779

68.443

99.187

0.679