Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H0S58_RS01320 Genome accession   NZ_CP059079
Coordinates   286063..286692 (+) Length   209 a.a.
NCBI ID   WP_053579418.1    Uniprot ID   A0A0M3RLP7
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281063..291692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS01305 (H0S58_01305) - 281197..282000 (+) 804 WP_195726927.1 putative RNA methyltransferase -
  H0S58_RS01310 (H0S58_01310) ponA 282308..284836 (-) 2529 WP_195726928.1 penicillin-binding protein PBP1a -
  H0S58_RS01315 (H0S58_01315) pilM 285002..286063 (+) 1062 WP_195726929.1 pilus assembly protein PilM Machinery gene
  H0S58_RS01320 (H0S58_01320) pilN 286063..286692 (+) 630 WP_053579418.1 PilN domain-containing protein Machinery gene
  H0S58_RS01325 (H0S58_01325) comO 286689..287429 (+) 741 WP_195726930.1 type 4a pilus biogenesis protein PilO Machinery gene
  H0S58_RS01330 (H0S58_01330) pilP 287429..287956 (+) 528 WP_195726931.1 pilus assembly protein PilP Machinery gene
  H0S58_RS01335 (H0S58_01335) pilQ 288018..290147 (+) 2130 WP_195727540.1 type IV pilus secretin PilQ family protein Machinery gene
  H0S58_RS01340 (H0S58_01340) aroK 290184..290732 (+) 549 WP_195726932.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23603.96 Da        Isoelectric Point: 4.9905

>NTDB_id=467030 H0S58_RS01320 WP_053579418.1 286063..286692(+) (pilN) [Acinetobacter sp. TTH0-4 strain 1BD1]
MARINLLPWRDELREKRKKEFIAICIGAALIGAFIVALTWFFYNHKLEDQEQANQLISSTNQNLDVQLKSLEGLEAQRNA
IIERMKLIQGLQSQRPIAVRLIDEMARVTPSNLYITKFVRVGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLA
VEEKKDKAPSSVVPRVEESYGSFVVTADLDEIASPSEPEAPQTTVEAAQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=467030 H0S58_RS01320 WP_053579418.1 286063..286692(+) (pilN) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGGCAAGAATTAACTTACTCCCTTGGCGCGATGAGCTAAGAGAGAAACGAAAAAAAGAATTTATAGCCATTTGTATTGG
GGCAGCTTTAATTGGGGCATTCATCGTTGCATTAACATGGTTTTTCTACAATCATAAACTTGAAGATCAGGAACAAGCCA
ATCAACTGATTAGCAGTACCAATCAAAATCTTGATGTACAGTTAAAGTCTTTAGAAGGTTTGGAAGCTCAACGTAATGCC
ATTATCGAGCGTATGAAGCTTATTCAGGGATTACAAAGCCAAAGACCCATTGCAGTGCGTTTAATTGATGAGATGGCACG
CGTAACACCAAGTAATTTATATATTACTAAGTTTGTCCGTGTGGGCGATAAATTTACCATTGAAGGTAAAGCTGAAAGTC
CGAATACAGTAGCAGAATTCTTACGTAATCTTGAAGCCTCTGCTTGGTATCGTAATGCATTTATGAATTCTTTTTTAGCA
GTAGAAGAGAAAAAGGATAAAGCACCAAGTTCTGTGGTGCCACGTGTTGAAGAAAGTTATGGTTCATTTGTTGTAACGGC
TGATCTAGATGAAATTGCATCACCTTCAGAACCAGAAGCACCACAAACTACAGTGGAGGCGGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M3RLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

70.192

99.522

0.699
  comN Acinetobacter baylyi ADP1

70.531

99.043

0.699