Detailed information NTG0467032

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J86_RS18890
• Genome accession: NZ_CP069451
• Coordinates: 3970590..3971582 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1256
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3965590..3976582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J86_RS18870 (I6J86_18870)	ygbM	3966221..3966997 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
I6J86_RS18875 (I6J86_18875)	ygbN	3967086..3968450 (+)	1365	WP_000104433.1	GntP family transporter	-
I6J86_RS18880 (I6J86_18880)	-	3968593..3969636 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6J86_RS18885 (I6J86_18885)	-	3969861..3970412 (+)	552	WP_001179442.1	flavodoxin family protein	-
I6J86_RS18890 (I6J86_18890)	rpoS	3970590..3971582 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J86_RS18895 (I6J86_18895)	nlpD	3971645..3972739 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6J86_RS18900 (I6J86_18900)	pcm	3972924..3973550 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6J86_RS18905 (I6J86_18905)	surE	3973544..3974305 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J86_RS18910 (I6J86_18910)	truD	3974286..3975335 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
I6J86_RS18915 (I6J86_18915)	ispF	3975332..3975811 (-)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J86_RS18920 (I6J86_18920)	ispD	3975811..3976521 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=467032 I6J86_RS18890 WP_000081550.1 3970590..3971582(-) (rpoS) [Escherichia coli strain FDAARGOS_1256]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=467032 I6J86_RS18890 WP_000081550.1 3970590..3971582(-) (rpoS) [Escherichia coli strain FDAARGOS_1256]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715