Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HZ993_RS21130 Genome accession   NZ_CP059068
Coordinates   4510330..4511547 (-) Length   405 a.a.
NCBI ID   WP_209394668.1    Uniprot ID   A0A975EAD5
Organism   Rhodoferax sp. AJA081-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4505330..4516547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ993_RS21100 (HZ993_21055) - 4506422..4507300 (+) 879 WP_209394663.1 ATP-binding protein -
  HZ993_RS21105 (HZ993_21060) - 4507297..4507782 (+) 486 WP_209394664.1 NUDIX domain-containing protein -
  HZ993_RS21110 (HZ993_21065) - 4507834..4508043 (-) 210 WP_209398666.1 DNA gyrase inhibitor YacG -
  HZ993_RS21115 (HZ993_21070) zapD 4508090..4508845 (-) 756 WP_209394665.1 cell division protein ZapD -
  HZ993_RS21120 (HZ993_21075) coaE 4508868..4509479 (-) 612 WP_209394666.1 dephospho-CoA kinase -
  HZ993_RS21125 (HZ993_21080) pilD 4509482..4510330 (-) 849 WP_209394667.1 A24 family peptidase Machinery gene
  HZ993_RS21130 (HZ993_21085) pilC 4510330..4511547 (-) 1218 WP_209394668.1 type II secretion system F family protein Machinery gene
  HZ993_RS21135 (HZ993_21090) pilB 4511569..4513302 (-) 1734 WP_209394669.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HZ993_RS21140 (HZ993_21095) - 4513459..4514907 (+) 1449 WP_209394670.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HZ993_RS21150 (HZ993_21105) - 4515043..4515972 (-) 930 WP_209398668.1 polyprenyl synthetase family protein -
  HZ993_RS21155 (HZ993_21110) rplU 4516181..4516492 (+) 312 WP_209394671.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44231.23 Da        Isoelectric Point: 9.6392

>NTDB_id=466973 HZ993_RS21130 WP_209394668.1 4510330..4511547(-) (pilC) [Rhodoferax sp. AJA081-3]
MATAKTDSSKDAVFEWEGKDRNGKQVRGEIRAAGENQVKASLRRQGVIPTKIKKRRMSAGKSIKPKDLAIFTRQLATMMK
AGVPLLQAFDIVGRGNPNPRVTKLLNDIRSDVETGTSLNVAFRKFPLYFDALYCNLVEAGESAGILDQLLDRLAVYMEKT
EAIKSKIKSALMYPISVLIVAFVVVAVIMIFVIPSFKEVFKSFGGELPAPTLVVIAMSEFFVKYWYLIFGGLGGGVYFFL
ESWKRNKKMQMVMDRIMLKLPIFGILVEKSCIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVFESGTLKIQQEVSTGT
ALTAAMTNANLFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVILGTVIGGIVVAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=466973 HZ993_RS21130 WP_209394668.1 4510330..4511547(-) (pilC) [Rhodoferax sp. AJA081-3]
ATGGCAACTGCAAAGACCGACAGCAGCAAAGACGCTGTTTTCGAATGGGAAGGCAAGGACCGCAACGGCAAGCAGGTGCG
GGGCGAAATTCGCGCGGCTGGAGAAAACCAGGTTAAGGCATCGCTGCGCCGCCAGGGCGTCATACCAACCAAGATCAAAA
AGCGCCGGATGAGCGCCGGCAAATCCATCAAACCCAAGGATTTGGCCATTTTTACGCGGCAACTGGCGACCATGATGAAG
GCTGGCGTGCCCCTGTTGCAGGCCTTTGACATTGTGGGCCGTGGCAACCCCAACCCCAGGGTAACCAAGCTGCTCAATGA
CATTCGCAGTGACGTGGAGACGGGTACCTCCCTCAATGTGGCCTTCCGCAAGTTCCCCTTGTACTTTGACGCGCTGTATT
GCAACCTGGTGGAAGCCGGCGAATCCGCGGGTATTTTGGACCAGTTGCTGGACCGGTTGGCTGTCTACATGGAAAAGACG
GAGGCCATCAAATCCAAGATTAAATCGGCACTGATGTATCCCATTAGCGTGCTGATCGTGGCATTTGTGGTGGTTGCGGT
CATCATGATTTTCGTGATTCCGTCGTTCAAGGAGGTTTTCAAGTCTTTTGGGGGAGAACTCCCCGCACCCACGCTAGTTG
TCATTGCGATGAGCGAATTCTTTGTTAAGTATTGGTACCTGATCTTTGGCGGCTTGGGTGGTGGGGTCTACTTCTTCTTG
GAGTCCTGGAAACGCAATAAAAAGATGCAGATGGTGATGGACAGGATCATGTTGAAGCTGCCGATCTTCGGCATCCTCGT
CGAAAAGTCCTGTATCGCCCGTTGGACCCGCACTTTGTCCACCATGTTTGCCGCCGGTGTGCCCTTGGTGGAAGCGCTGG
ATTCGGTGGGTGGTGCTTCGGGGAACAGTGTTTTTGAATCTGGAACGCTCAAGATTCAGCAAGAAGTGTCCACTGGAACC
GCCTTGACCGCCGCCATGACCAATGCCAACCTGTTCCCGTCCATGGTGCTGCAGATGTGTGCCATTGGTGAAGAATCGGG
CTCTATCGACCACATGCTGGGTAAAGCGGCCGACTTTTACGAAGCGGAAGTAGACGATATGGTGGCCGGTATATCGAGCC
TGATGGAGCCCATCATTATTGTGATTCTGGGTACCGTGATTGGAGGCATCGTGGTCGCCATGTACCTGCCAATTTTCAAG
CTGGGCCAGGTTGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.885

98.519

0.531
  pilG Neisseria gonorrhoeae MS11

51.629

98.519

0.509
  pilC Legionella pneumophila strain ERS1305867

51.768

97.778

0.506
  pilG Neisseria meningitidis 44/76-A

51.378

98.519

0.506
  pilC Acinetobacter baylyi ADP1

49.268

100

0.499
  pilC Acinetobacter baumannii D1279779

48.615

98.025

0.477
  pilC Vibrio cholerae strain A1552

41.058

98.025

0.402
  pilC Thermus thermophilus HB27

37.825

100

0.395
  pilC Vibrio campbellii strain DS40M4

37.561

100

0.38