NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	HZ993_RS21125	Genome accession	NZ_CP059068
Coordinates	4509482..4510330 (-)	Length	282 a.a.
NCBI ID	WP_209394667.1	Uniprot ID	A0A975E917
Organism	Rhodoferax sp. AJA081-3
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4504482..4515330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZ993_RS21095 (HZ993_21050)	argJ	4505189..4506418 (+)	1230	WP_209394662.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
HZ993_RS21100 (HZ993_21055)	-	4506422..4507300 (+)	879	WP_209394663.1	ATP-binding protein	-
HZ993_RS21105 (HZ993_21060)	-	4507297..4507782 (+)	486	WP_209394664.1	NUDIX domain-containing protein	-
HZ993_RS21110 (HZ993_21065)	-	4507834..4508043 (-)	210	WP_209398666.1	DNA gyrase inhibitor YacG	-
HZ993_RS21115 (HZ993_21070)	zapD	4508090..4508845 (-)	756	WP_209394665.1	cell division protein ZapD	-
HZ993_RS21120 (HZ993_21075)	coaE	4508868..4509479 (-)	612	WP_209394666.1	dephospho-CoA kinase	-
HZ993_RS21125 (HZ993_21080)	pilD	4509482..4510330 (-)	849	WP_209394667.1	A24 family peptidase	Machinery gene
HZ993_RS21130 (HZ993_21085)	pilC	4510330..4511547 (-)	1218	WP_209394668.1	type II secretion system F family protein	Machinery gene
HZ993_RS21135 (HZ993_21090)	pilB	4511569..4513302 (-)	1734	WP_209394669.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HZ993_RS21140 (HZ993_21095)	-	4513459..4514907 (+)	1449	WP_209394670.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

Download Length: 282 a.a. Molecular weight: 30579.18 Da Isoelectric Point: 7.5116

                                >NTDB_id=466972 HZ993_RS21125 WP_209394667.1 4509482..4510330(-) (pilD) [Rhodoferax sp. AJA081-3]

MLVVDTQWFWASVIALFGLLIGSFLNVVVYRLPKMLERQWADECAEMSGTAPAAVEPFNLMLPRSRCPHCGHVIAWYENI

PVLSYVALRGRCAACKAPISLRYPVVELATSAVFFWCAWQWGPSASGLAWCTFSAALLTLALIDWDTTLLPDDLTLPLLW

LGLIAAALRWTPVGLNAALWGAVAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALIPIILLASVIGAVVG

IAMKFTTGLREGGYVPFGPFLAGAGFAALFLGPDALRRAAGL

Nucleotide

Download Length: 849 bp

                                >NTDB_id=466972 HZ993_RS21125 WP_209394667.1 4509482..4510330(-) (pilD) [Rhodoferax sp. AJA081-3]

ATGCTGGTTGTTGATACGCAGTGGTTTTGGGCCAGCGTTATTGCTCTGTTTGGGTTGTTGATCGGTAGTTTTCTCAACGT

AGTCGTCTATCGGCTCCCCAAAATGCTGGAGCGGCAATGGGCAGATGAGTGTGCCGAAATGTCCGGCACGGCGCCTGCTG

CTGTTGAGCCTTTCAACCTAATGCTGCCCCGCTCCAGATGTCCGCACTGTGGGCATGTGATTGCCTGGTACGAAAACATA

CCCGTCTTGAGCTACGTTGCCCTGCGCGGGCGTTGCGCAGCCTGCAAAGCTCCCATCAGCCTGCGCTACCCGGTGGTTGA

GCTCGCAACCAGTGCGGTTTTCTTTTGGTGTGCCTGGCAGTGGGGGCCGTCGGCATCGGGCTTGGCTTGGTGCACTTTCT

CTGCGGCACTCCTGACGCTTGCGCTCATTGATTGGGACACAACCCTCTTGCCAGACGACTTAACGCTGCCGTTGTTATGG

CTGGGCCTTATTGCTGCGGCCCTGCGCTGGACGCCTGTGGGCTTGAATGCCGCGCTCTGGGGTGCGGTCGCAGGGTATTT

GTCTCTGTGGTTGGTGTATTGGGCCTTCAAGCTGGCAACTGGCAAGGAAGGCATGGGCTATGGCGACTTTAAACTCTTTG

CAGCCTTGGGTGCATGGTTTGGCTGGCAGGCACTGATCCCCATCATTTTGCTAGCCTCCGTCATTGGTGCGGTGGTGGGC

ATTGCCATGAAGTTCACGACGGGTTTGCGTGAAGGTGGTTATGTGCCATTTGGCCCCTTCCTTGCTGGTGCCGGCTTTGC

CGCACTGTTTTTGGGGCCTGATGCTCTACGACGGGCCGCCGGTCTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-121)

Type IV leader peptidase family (Peptidase_A24)

(133-241)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	51.282	96.809	0.496
pilD	Vibrio campbellii strain DS40M4	48.718	96.809	0.472
pilD	Neisseria gonorrhoeae MS11	47.778	95.745	0.457
pilD	Acinetobacter baumannii D1279779	44.689	96.809	0.433
pilD	Acinetobacter nosocomialis M2	43.956	96.809	0.426

Detailed information NTG0466972