Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HZU75_RS10575 Genome accession   NZ_CP058952
Coordinates   2227332..2228558 (-) Length   408 a.a.
NCBI ID   WP_180306040.1    Uniprot ID   A0A7D5ZHH9
Organism   Chitinibacter fontanus strain STM-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2222332..2233558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZU75_RS10545 (HZU75_10545) - 2223044..2223814 (-) 771 WP_228028023.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  HZU75_RS10550 (HZU75_10550) - 2223870..2224619 (-) 750 WP_180306036.1 GNAT family N-acetyltransferase -
  HZU75_RS10555 (HZU75_10555) - 2224814..2225008 (-) 195 WP_228028024.1 DNA gyrase inhibitor YacG -
  HZU75_RS10560 (HZU75_10560) zapD 2225005..2225763 (-) 759 WP_180306037.1 cell division protein ZapD -
  HZU75_RS10565 (HZU75_10565) coaE 2225788..2226411 (-) 624 WP_180306038.1 dephospho-CoA kinase -
  HZU75_RS10570 (HZU75_10570) pilD 2226417..2227283 (-) 867 WP_180306039.1 A24 family peptidase Machinery gene
  HZU75_RS10575 (HZU75_10575) pilC 2227332..2228558 (-) 1227 WP_180306040.1 type II secretion system F family protein Machinery gene
  HZU75_RS10580 (HZU75_10580) pilB 2228573..2230279 (-) 1707 WP_180306041.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HZU75_RS10585 (HZU75_10585) - 2230520..2231326 (-) 807 WP_180306042.1 inner membrane protein YpjD -
  HZU75_RS10590 (HZU75_10590) ffh 2231408..2232751 (+) 1344 WP_180306043.1 signal recognition particle protein -
  HZU75_RS10595 (HZU75_10595) rpsP 2232851..2233096 (+) 246 WP_157670806.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44558.44 Da        Isoelectric Point: 9.9926

>NTDB_id=466139 HZU75_RS10575 WP_180306040.1 2227332..2228558(-) (pilC) [Chitinibacter fontanus strain STM-7]
MAVKTKSPAAKEFAFRWEGKDRTNKIVKGEMRASGENVVKSTLRRQGINVTSVKKVRLGAGRKISDQDITMFTRQLATML
KSGVPLLTAFDIVAKGHSNPSVTKLLLEIKTDIETGSSLTQAFRKHPNQFDNLYCNLVQAGEQAGILDALLARLATYKEK
ILAVKKKIKSAMFYPTAVIVAAFVITAVIMIFVIPAFKELFSSFGADLPGPTLLVMAISDFFVTYWYIIFGGIFGGIYLF
LQAWKKSEKLQFFMDRLLLKLPIFGEIVRNATIARWTRTLATMFAAGVPLVESLESVGGAAGNIIYKQATQKIQSEVSTG
TNLTTAMQNTNVFPNMVLQMVSIGEESGSLDSMLGKVADYFEEEVDNAVEALSSLMEPVIMVVLGTLIGGLVIAMYLPIF
KMGAAVGG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=466139 HZU75_RS10575 WP_180306040.1 2227332..2228558(-) (pilC) [Chitinibacter fontanus strain STM-7]
ATGGCCGTAAAAACAAAAAGTCCAGCAGCCAAAGAGTTCGCCTTTCGCTGGGAAGGAAAAGACCGTACTAATAAGATCGT
AAAAGGTGAAATGCGTGCGAGCGGCGAAAATGTTGTGAAAAGCACCTTACGCCGTCAAGGCATTAATGTCACCAGCGTTA
AAAAAGTTCGCCTTGGCGCAGGCAGAAAGATCTCCGACCAAGATATCACCATGTTTACTCGACAGCTGGCGACCATGCTG
AAATCAGGCGTACCACTACTGACTGCTTTTGATATCGTCGCAAAAGGTCACAGCAACCCGTCGGTAACGAAACTATTGCT
AGAAATTAAAACAGACATCGAAACAGGCTCTTCACTTACACAAGCCTTCAGAAAACACCCAAATCAGTTTGATAACCTAT
ATTGCAACCTAGTACAGGCCGGTGAACAAGCAGGTATTTTGGATGCCCTACTGGCTCGTCTGGCTACCTACAAAGAAAAA
ATTCTCGCCGTTAAAAAGAAAATCAAATCAGCGATGTTCTACCCAACAGCGGTGATTGTGGCCGCTTTTGTGATCACTGC
TGTCATTATGATCTTCGTAATCCCAGCCTTTAAAGAGCTATTCTCAAGCTTTGGAGCGGATCTACCCGGCCCAACCCTAC
TGGTTATGGCCATTTCGGACTTTTTCGTTACCTACTGGTATATTATTTTCGGCGGGATTTTTGGTGGCATCTATTTATTC
CTGCAAGCATGGAAGAAATCAGAAAAGCTGCAATTTTTCATGGATCGTTTACTGCTCAAGCTGCCGATATTTGGTGAGAT
TGTGCGCAACGCCACTATTGCACGCTGGACACGCACCTTAGCGACGATGTTTGCAGCAGGTGTTCCGCTGGTGGAATCAC
TCGAATCAGTAGGTGGGGCCGCAGGTAATATCATCTACAAGCAAGCAACCCAAAAGATTCAATCTGAAGTCAGTACTGGT
ACCAATTTAACAACCGCCATGCAGAACACGAATGTGTTTCCAAATATGGTTTTGCAAATGGTCTCCATTGGTGAGGAATC
AGGTTCGCTTGATAGCATGCTGGGCAAGGTAGCGGACTACTTCGAAGAAGAAGTCGACAATGCGGTTGAAGCGCTCTCTA
GCCTGATGGAACCCGTCATTATGGTCGTACTAGGGACCCTAATCGGAGGTTTGGTCATCGCCATGTACCTTCCCATCTTC
AAAATGGGGGCCGCGGTGGGCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5ZHH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.788

97.059

0.522
  pilG Neisseria gonorrhoeae MS11

52.381

97.794

0.512
  pilC Acinetobacter baumannii D1279779

52.393

97.304

0.51
  pilG Neisseria meningitidis 44/76-A

51.88

97.794

0.507
  pilC Pseudomonas stutzeri DSM 10701

50.873

98.284

0.5
  pilC Acinetobacter baylyi ADP1

51.134

97.304

0.498
  pilC Vibrio cholerae strain A1552

40.25

98.039

0.395
  pilC Vibrio campbellii strain DS40M4

37.44

100

0.38
  pilC Thermus thermophilus HB27

35.663

100

0.363