Detailed information NTG0466138

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HZU75_RS10570
• Genome accession: NZ_CP058952
• Coordinates: 2226417..2227283 (-)
• Length: 288 a.a.
• NCBI ID: WP_180306039.1
• Uniprot ID: A0A7D5ZE94
• Organism: Chitinibacter fontanus strain STM-7
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2221417..2232283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZU75_RS10535 (HZU75_10535)	rplQ	2221822..2222202 (+)	381	WP_180306033.1	50S ribosomal protein L17	-
HZU75_RS10540 (HZU75_10540)	-	2222269..2223090 (+)	822	WP_180306034.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
HZU75_RS10545 (HZU75_10545)	-	2223044..2223814 (-)	771	WP_228028023.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
HZU75_RS10550 (HZU75_10550)	-	2223870..2224619 (-)	750	WP_180306036.1	GNAT family N-acetyltransferase	-
HZU75_RS10555 (HZU75_10555)	-	2224814..2225008 (-)	195	WP_228028024.1	DNA gyrase inhibitor YacG	-
HZU75_RS10560 (HZU75_10560)	zapD	2225005..2225763 (-)	759	WP_180306037.1	cell division protein ZapD	-
HZU75_RS10565 (HZU75_10565)	coaE	2225788..2226411 (-)	624	WP_180306038.1	dephospho-CoA kinase	-
HZU75_RS10570 (HZU75_10570)	pilD	2226417..2227283 (-)	867	WP_180306039.1	A24 family peptidase	Machinery gene
HZU75_RS10575 (HZU75_10575)	pilC	2227332..2228558 (-)	1227	WP_180306040.1	type II secretion system F family protein	Machinery gene
HZU75_RS10580 (HZU75_10580)	pilB	2228573..2230279 (-)	1707	WP_180306041.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HZU75_RS10585 (HZU75_10585)	-	2230520..2231326 (-)	807	WP_180306042.1	inner membrane protein YpjD	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31159.01 Da
• Isoelectric Point: 6.3120

>NTDB_id=466138 HZU75_RS10570 WP_180306039.1 2226417..2227283(-) (pilD) [Chitinibacter fontanus strain STM-7]
MMELLATNYGVVGICAVLGLMVGSFLNVVIHRLPIMIERNFRTECQLLDQNENSPSISPTTEHTYNLATPRSACPQCGHQ
ISALENIPLVSWMVLGGKCSQCKSSISIRYPLVELVCSLISAGLAWHFGFSIALLGALLLSWSLIALILIDADTYLLPDD
ITLPLVWLGLLFNLQGTFTTIDSAVYGAIAGYMSLWSIYWLFKLITGKEGMGYGDFKLLAALGAWLGIAMLPAIILLSSL
SGAIIGIAMICGAKHGWNKPLPFGPYLGIAGFLALIWGKDISQMLYGI

Nucleotide

• Length: 867 bp

>NTDB_id=466138 HZU75_RS10570 WP_180306039.1 2226417..2227283(-) (pilD) [Chitinibacter fontanus strain STM-7]
ATGATGGAATTACTTGCAACTAACTATGGCGTCGTCGGCATTTGCGCGGTACTTGGCCTAATGGTGGGCAGTTTTTTGAA
TGTTGTTATTCATCGACTGCCGATCATGATCGAACGAAACTTTCGCACCGAATGTCAATTATTAGACCAAAACGAAAACA
GCCCATCAATTTCACCTACTACTGAACACACCTATAACCTAGCCACACCACGCTCTGCATGCCCACAATGCGGGCATCAA
ATTAGTGCACTTGAAAATATCCCCTTGGTGAGCTGGATGGTACTCGGGGGCAAATGTAGCCAATGTAAGAGCTCGATCAG
CATACGCTACCCTTTAGTGGAGCTAGTATGCAGCTTGATATCTGCAGGTCTGGCTTGGCATTTTGGCTTCAGTATCGCCT
TACTCGGTGCACTACTTTTAAGCTGGTCGCTGATTGCCCTAATTCTGATTGATGCAGACACCTATTTGCTACCTGATGAC
ATTACTCTACCACTAGTCTGGCTAGGCTTGTTATTTAACCTCCAAGGCACCTTCACCACAATAGACAGCGCAGTATATGG
TGCAATCGCAGGCTACATGAGCCTTTGGAGCATATACTGGCTTTTTAAACTAATAACAGGCAAAGAAGGCATGGGGTATG
GAGATTTCAAACTGCTTGCTGCCTTAGGGGCCTGGCTGGGTATAGCAATGCTACCGGCGATTATCTTACTTTCTTCACTC
AGTGGAGCCATAATTGGCATCGCCATGATCTGTGGTGCTAAGCATGGCTGGAATAAACCCCTTCCTTTCGGCCCTTATTT
AGGTATCGCAGGCTTTCTGGCATTAATCTGGGGCAAAGATATATCCCAAATGCTTTACGGGATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-128)

3D structure

• AlphaFold DB: A0A7D5ZE94

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.015	94.792	0.493
pilD	Vibrio cholerae strain A1552	52.788	93.403	0.493
pilD	Acinetobacter nosocomialis M2	50.916	94.792	0.483
pilD	Acinetobacter baumannii D1279779	50.549	94.792	0.479
pilD	Neisseria gonorrhoeae MS11	49.81	91.319	0.455